SoleaDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: Solea senegalensis v3.0 (global assembly)

UniGene Name: solea_v3.0_unigene239222

Length: 204 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>solea_v3.0_unigene239222
GGAGGAAATGAAGAACGTGAAGCGTGTGGTCGGGTGAGGACGGACGCATGTGCATTAACACAGAGTGGGGAGGCTTCGGAGACGACCACTCCCTGAGGGACATCCTGACAGAGTTTGACCTGATGGTGGACAACATGTCCATCAACCCCGGCGTCATTTTTGGGCATGAGGTGTGTTAGTGTGACTATATTTTCAGTTAATGTT

Ace file of the UniGene solea_v3.0_unigene239222 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes).	-	-	0.0	80%
AutoFact	similar to hexokinase 1; K00844 hexokinase [EC:2.7.1.1]	-	-	9.0e-10	70%

Source	ECs	Term	Type	e value	Identity
AutoFact	hexokinase	EC:2.7.1.1	-	9.0e-10	70%

Source	KEGGs	Term	e value	Identity
AutoFact	Glycolysis / Gluconeogenesis	00010	9.0e-10	70%
AutoFact	Fructose and mannose metabolism	00051	9.0e-10	70%
AutoFact	Galactose metabolism	00052	9.0e-10	70%
AutoFact	Starch and sucrose metabolism	00500	9.0e-10	70%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	9.0e-10	70%
AutoFact	Biosynthesis of phenylpropanoids	01061	9.0e-10	70%
AutoFact	Biosynthesis of terpenoids and steroids	01062	9.0e-10	70%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	9.0e-10	70%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	9.0e-10	70%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065	9.0e-10	70%
AutoFact	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	9.0e-10	70%
AutoFact	Biosynthesis of plant hormones	01070	9.0e-10	70%
AutoFact	Metabolic pathways	01100	9.0e-10	70%
AutoFact	Biosynthesis of secondary metabolites	01110	9.0e-10	70%
AutoFact	Microbial metabolism in diverse environments	01120	9.0e-10	70%
AutoFact	Streptomycin biosynthesis	00521	9.0e-10	70%
AutoFact	Butirosin and neomycin biosynthesis	00524	9.0e-10	70%

Source	Gene names
Sma3	HK1;

Source	GOs	Term	Type	e value	Identity
Sma3	hexokinase activity	GO:0004396	Molecular Function	7.261e-32	-
Sma3	ATP binding	GO:0005524	Molecular Function	5.71e-10	-
Sma3	glycolytic process	GO:0006096	Biological Process	6.142e-22	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Hexokinase	IPR001312	-	1.925e-34	-
Sma3	Hexokinase, conserved site	IPR019807	-	9.91e-32	-
Sma3	Hexokinase, N-terminal	IPR022672	-	5.498e-35	-
Sma3	Hexokinase, C-terminal	IPR022673	-	3.486e-35	-

Source	Species	ID	Description	e value	Identity
RefSeq	Danio rerio	NP_998417	hexokinase-1 [Danio rerio]	3.0e-13	67%
Ensembl	Danio rerio	ENSDARP00000057637	-	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: actinopterygii.fasta

Fln subject: H2RTT2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 1011 aas, your sequence is shorter than subject: 59 - 1316

Fln protein: RK*RT*SVWSGEDGRMCINTEWGGFGDDHSLRDILTEFDLMVDNMSINPGVIFGHEVC*

Protein Length: 60

Fln nts: GGAGGAAATGAAGAACGTGAAGCGTGTGGTCGGGTGAGGACGGACGCATGTGCATTAACACAGAGTGGGGAGGCTTCGGAGACGACCACTCCCTGAGGGACATCCTGACAGAGTTTGACCTGATGGTGGACAACATGTCCATCAACCCCGGCGTCATTTTTGGGCATGAGGTGTGTTAGTGTGACTATATTTTCAGTTAATGTT

Fln Alignment:

gr2_est_c49169___GEDGRMCINTEWGGFGDDHSLRDILTEFDLMVDNMSINPGV
H2RTT2___________________GEDGRMCINTEWGGFGDDGSLKDIQTTFDVMVDEASVNPGV

Curation

No curations to show

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