SoleaDB

Assembly Name: Solea senegalensis v3.0 (global assembly)

UniGene Name: solea_v3.0_unigene13634

Length: 1458 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene solea_v3.0_unigene13634 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
FL-Next	tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica).	-	-	80%
Sma3	Uncharacterized protein	-	-	-
AutoFact	ctbs, MGC109937, zgc:109937; chitobiase, di-N-acetyl-; K12310 Di-N-acetylchitobiase [EC:3.2.1.-]	-	-	70%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	70%

Source	KEGGs	Term	Identity
AutoFact	Ascorbate and aldarate metabolism	00053	70%
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	70%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	70%
AutoFact	Glycosaminoglycan degradation	00531	70%
AutoFact	Metabolic pathways	01100	70%

Source	Gene names
Sma3	CTBS;

Source	GOs	Term	Type	Identity
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Glycoside hydrolase, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, superfamily	IPR017853	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Danio rerio	NP_001018565	di-N-acetylchitobiase precursor [Danio rerio]	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: actinopterygii.fasta

Fln subject: I3JKB9

Fln msg:

Fln protein: MNWLFAVLVTTVAVCGANICPCERAELCEQIRQQRDFEVFLFDVGSKTWKFYDWSMVTTVATFGKYDAELLCFAHSKGARVVLKGDVPLSYIVDQENRTAWITEKVNLAKSQFMDGINIDIEQAVDQGSPEFHALTDLVRETTEAFHREIPGSQVSFDVAWSPNCIDKRCYDYVAIAESCDLLFVMSYDEQSQITGDCIAMANAPVAQTLNGYDQYLSLKIDPKKLVMGVPWYGYDYPCLNLSQEGICSIDKVPFRGAPCSDAAGKQKTYKWIMTQVNSSLSGRLWDSEQKAPYFNYKDQSGQIHQVWYDDPQSICLKTNYVKSNGLRGVGMWNANILDYSGETVAKQQTEMMWNALFGC*

Protein Length: 362

Fln nts: TTTGTCCCACGCCGTTTTGGGTACATTAGTCGTGTGTTGTTGTTGGTTTGTTAGTTTGTGATTTAAAGGTGAAAC_-_ATGAACTGGCTTTTCGCGGTTTTGGTGACGACCGTCGCGGTCTGCGGAGCCAACATTTGTCCGTGTGAGAGAGCAGAGCTGTGTGAGCAGATCCGTCAGCAGAGAGACTTTGAGGTGTTTTTGTTTGATGTTGGTAGCAAGACGTGGAAGTTCTATGACTGGAGCATGGTAACAACAGTGGCGACATTTGGGAAATATGATGCCGAACTTTTGTGCTTCGCTCACTCCAAAGGAGCACGCGTCGTTCTCAAAGGTGACGTTCCCCTCTCCTACATTGTGGACCAAGAAAACAGGACAGCGTGGATAACAGAGAAAGTCAACTTGGCCAAAAGTCAGTTTATGGATGGAATCAACATCGACATTGAACAAGCGGTGGATCAGGGCTCGCCTGAGTTCCATGCTCTCACCGACCTGGTTAGAGAAACCACTGAGGCTTTCCACAGGGAGATCCCAGGGTCACAGGTCTCCTTCGATGTTGCCTGGTCACCGAACTGTATTGACAAACGCTGCTATGATTACGTTGCCATTGCTGAATCCTGTGACCTGCTTTTTGTCATGTCCTACGATGAGCAAAGTCAGATCACTGGGGATTGTATTGCAATGGCAAACGCCCCAGTCGCGCAAACACTAAATGGCTATGACCAGTATTTGAGTCTGAAGATCGATCCAAAGAAACTAGTGATGGGTGTTCCATGGTACGGCTATGACTACCCATGCCTCAACCTTTCCCAGGAAGGGATATGCTCCATAGACAAAGTTCCTTTCCGTGGAGCTCCCTGCAGTGATGCAGCTGGAAAACAGAAGACATACAAGTGGATCATGACGCAGGTCAACAGCTCGCTGTCAGGCAGGTTATGGGACAGCGAGCAGAAGGCTCCCTACTTCAATTACAAGGACCAGAGTGGACAGATTCATCAGGTCTGGTATGATGATCCACAGAGTATTTGTCTGAAGACAAACTATGTGAAATCTAATGGTCTGAGGGGCGTCGGCATGTGGAATGCCAACATCTTGGACTACAGTGGTGAAACAGTTGCCAAGCAGCAGACAGAGATGATGTGGAATGCCCTGTTTGGATGCTAG___CTGGGACACAAGACATTTACACCACCCCGAGTCCACTCCTGTTTGTTGCTAAGTCAATATATGCCTTTGTAAGCAGTAACGGGTTGTGAGTTCGGGGATGCATACCTTAACTTGAGAGTTTATTGTGGCTTTTATTGCTTTGTTTTTGAATGTAGTAACGCCTCAGACATTCCTCTGTGCTAAATGAAATAACAGGGATTCACTGAAAAACAACGCAGTATTTTTGATTCACCAAAGTTGAGTTCGTTGTGGTCTGTGCACTTTTCCTAAAATAAAATATTTTCTGACAAATTGCTGATG

Fln Alignment:

Contig13634___LFAVLVTTVAVCGANICPCERAELCEQIRQQRDFEVFLFDVGSKTWKFYDWSMVTTVATFGKYDAELLCFAHSKGARVVLKGDVPLSYIVDQENRTAWITEKVNLAKSQFMDGINIDIEQAVDQGSPEFHALTDLVRETTEAFHREIPGSQVSFDVAWSPNCIDKRCYDYVAIAESCDLLFVMSYDEQSQITGDCIAMANAPVAQTLNGYDQYLSLKIDPKKLVMGVPWYGYDYPCLNLSQEGICSIDKVPFRGAPCSDAAGKQKTYKWIMTQVNSSLSGRLWDSEQKAPYFNYKDQSGQIHQVWYDDPQSICLKTNYVKSNGLRGVGMWNANILDYSGETVAKQQTEMMWNALFGC
I3JKB9__________________FLVILCSLLAACRSSVCPCERPELCQQIREEKDFEVFIFDVGGKTWKSYNWSMVTTVAVFGKYDAELMCYAHSKGARVVLKGDVPLSYIVDQDNRTAWITDKVMLAKSQFMDGINIDIEQAVEEGSSEYYALTSLVKETTEMFHREIPGSQVSFDVAWSPKCIDKRCYDYVTIAESCDLLFVMSYDEQSQITGDCIAMANAPLRQTLDAYDQYLNLKISPKKIVMGVPWYGYDYPCLNFSQEGVCSIEKVPFRGVPCSDAAGKQKPYKWLMKQVNSSMSGRLWDDEQQAPYFNYKDQNGQIHQVWYDDPQSICPKADSVMSKDLRGIGMWNANILDYSDDPDARQQTTMMWNALLGC

SNPs (tot: 0)

Position	A %	C %	G %	T %	Probability
912		20		80	0.995493
980		87	12		0.992554
981	87			12	0.992554
995	87		12		0.992554
999	12		87		0.992554
1085		87		12	0.992554
1114	85		14		0.993533
1148		14		85	0.993533
1268	20	80			0.995493
1317		66		33	1.0
1439	66	33			0.997452

Curation

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