SoleaDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: Solea senegalensis v3.0 (global assembly)

UniGene Name: solea_v3.0_unigene47

Length: 437 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>solea_v3.0_unigene47
TTGATCCCTGTGTTGCATCTACAGATGGGCGACTCAGGGTTTTGATTTTCTTCAGGCCATTGAACCTGCCTTTATATCAGCACTACCTGAGGATGACTTCCTGGTAAATGGCCTGTTTTCCCTCTCAATATAGCATGTTTGCACAGGAATATGTAAAATATGACAAATGTATGATCTGTTGACTGTAAATGTTGCATTTCTTCCTCCAGAATTTACAAGCTTTGATGAATGAATGTATTGGACATGTGATCGGAAAACCCCACAGCCCGGTCACTGGCCCGTACATTGGTAAGATGAATCCCTTGTGGTATGAACTGTCAGTGACTGTTGCATCTGGAGTTCACGCTTTTTGTTAGTGTTTACATTCTTTTGCAAGATTATTAGTTCGTTGTCAAGGTGACACAAAACAGACACAACACCAATGAAATTAATGTCCT

Ace file of the UniGene solea_v3.0_unigene47 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica).	-	-	0.0	77%
AutoFact	PREDICTED: mitogen-activated protein kinase kinase kinase 4 n=1 Tax=Nomascus leucogenys RepID=UPI00020AD69F	-	-	5.0e-08	77%

Source	Gene names
Sma3	MAP3K4;

Source	GOs	Term	Type	e value	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	1.378e-08	-
Sma3	ATP binding	GO:0005524	Molecular Function	5.545e-06	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein kinase domain	IPR000719	-	1.326e-07	-
Sma3	Serine/threonine- /dual specificity protein kinase, catalytic domain	IPR002290	-	1.447e-10	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	1.833e-08	-
Sma3	Protein kinase-like domain	IPR011009	-	1.654e-07	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	1.364e-08	-
Sma3		IPR017442	-	4.502e-08	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: actinopterygii.fasta

Fln subject: I3JTW4

Fln msg: Separated hits, possible frame ERROR between 139 and 210, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 407 aas, your sequence is shorter than subject: 119 - 1582

Fln protein: *SLCCIYRWATQGFDFLQAIEPAFISALPEDDFLVNGLFSLSI*HxxxxxxxxxxxxxxxxxxxxxxxxxNLQALMNECIGHVIGKPHSPVTGPYIGKMNPLWYELSVTVASGVHAFC*

Protein Length: 120

Fln nts: TTGATCCCTGTGTTGCATCTACAGATGGGCGACTCAGGGTTTTGATTTTCTTCAGGCCATTGAACCTGCCTTTATATCAGCACTACCTGAGGATGACTTCCTGGTAAATGGCCTGTTTTCCCTCTCAATATAGCATGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAATTTACAAGCTTTGATGAATGAATGTATTGGACATGTGATCGGAAAACCCCACAGCCCGGTCACTGGCCCGTACATTGGTAAGATGAATCCCTTGTGGTATGAACTGTCAGTGACTGTTGCATCTGGAGTTCACGCTTTTTGTTAGTGTTTACATTCTTTTGCAAGATTATTAGTTCGTTGTCAAGGTGACACAAAACAGACACAACACCAATGAAATTAATGTCCT

Fln Alignment:

Contig47___RWATQGFDFLQAIEPAFISALPEDDFL-VNGLFSLSI*HVxxxxxxxxxxxxxxxxxxxxxxxxNLQALMNECIGHVIGKPHSPVTGPYIGKMN
I3JTW4_______________RWATQGFDFLQAIEPAFISALPEDDFLNLQALMNECIGHVxxxxxxxxxxxxxxxxxxxxxxxxNLQALMNECIGHVIGKPHSPVTGLYFGPRN

Curation

No curations to show

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