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Assembly Name: Ovary f1 v1.0

UniGene Name: ovary_f1_v1.0_unigene8284

Length: 458 nt

UniGene Fasta

>ovary_f1_v1.0_unigene8284
GGTCCAAATTGTTGGACCTTAAGAAACAACTGGCTGTGACTGAGCAGGGCGACAAAGTGCGAACACTCAAAGGCCAGAAGGCAGAGAAGCAGTGATCACAGCAGAAGTGGCCAAATTGTTGGACCTTAAGAAACAACTGGCTGTGGCTGAGGGGAAGAGCCTGGAGCCTGCTGCACCTCAGAAGAGCAAGAAGAAGTGAGACTGCAACAAAAGGATAACAAAATGATGGAGGATTGTCAGAGGAAGGGAGGAATAAAATGGTTTGAGGTATGTGAGAGGAGGATTGGAACAAGATGTACACCGAGAGATGAGGGTATTAGCTTACGGCAAAGCCGTGACAGGATCTAAGACAATGTGGTATTGGCACAGAGGACTAATTGAAATGCTGTATAGGCCGACAGGGAAATGAAAACACACAGACTGAGTCAAATGAATGCAGCTACAGAATGGAGGGATTC

Ace file of the UniGene ovary_f1_v1.0_unigene8284

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr='Methionyl-tRNA synthetase, cytoplasmic'; Dicentrarchus labrax (European seabass) (Morone labrax).	-	-	0.0	85%
Sma3	'Methionyl-tRNA synthetase, cytoplasmic'	-	-	5.735e-06	-
AutoFact	'Methionyl-tRNA synthetase, cytoplasmic' n=1 Tax=Dicentrarchus labrax RepID=E6ZF84_DICLA	-	-	8.0e-12	77%

Source	Gene names
Sma3	DLA_It02590; MARS;

Source	GOs	Term	Type	e value	Identity
Sma3	methionine-tRNA ligase activity	GO:0004825	Molecular Function	8.097e-09	-
Sma3	methionyl-tRNA aminoacylation	GO:0006431	Biological Process	7.393e-09	-

Source	InterPros	Term	Type	e value	Identity
Sma3	WHEP-TRS	IPR000738	-	6.051e-08	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	4.595e-07	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	1.989e-07	-
Sma3	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding	IPR009080	-	3.433e-07	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	5.125e-06	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	5.874e-06	-
Sma3	Methionyl-tRNA synthetase	IPR014758	-	8.097e-09	-
Sma3	Methionyl/Leucyl tRNA synthetase	IPR015413	-	1.04e-08	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	3.1e-06	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: actinopterygii.fasta

Fln subject: E6ZF84

Fln msg: Overlapping hits, possible frame ERROR between 89 and 77, your sequence is shorter than subject: 66 - 861

Fln protein: SKLLDLKKQLAVTEQGDKVRTLKGxxxxxxVITAEVAKLLDLKKQLAVAEGKSLEPAAPQKSKKK*

Protein Length: 67

Fln nts: GGTCCAAATTGTTGGACCTTAAGAAACAACTGGCTGTGACTGAGCAGGGCGACAAAGTGCGAACACTCAAAGGCxxxxxxxxxxxxxxxxxxGTGATCACAGCAGAAGTGGCCAAATTGTTGGACCTTAAGAAACAACTGGCTGTGGCTGAGGGGAAGAGCCTGGAGCCTGCTGCACCTCAGAAGAGCAAGAAGAAGTGAGACTGCAACAAAAGGATAACAAAATGATGGAGGATTGTCAGAGGAAGGGAGGAATAAAATGGTTTGAGGTATGTGAGAGGAGGATTGGAACAAGATGTACACCGAGAGATGAGGGTATTAGCTTACGGCAAAGCCGTGACAGGATCTAAGACAATGTGGTATTGGCACAGAGGACTAATTGAAATGCTGTATAGGCCGACAGGGAAATGAAAACACACAGACTGAGTCAAATGAATGCAGCTACAGAATGGAGGGATTC

Fln Alignment:

Contig8284___LAVTEQGDKVRTLKGQxxxxAVITAEVAKLLDLKKQLAVAEGKSLEPAAPQKSKKK
E6ZF84____________________LAVTEQGEKVRALKAQxxxxAVITAEVTKLLDLKKQLALAEGKSPEP-APQKGKKK

Curation

No curations to show

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