SoleaDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: Solea senegalensis v1.0 (global assembly)

UniGene Name: solea_v1.0_unigene19123

Length: 570 nt

Origin of reads: Immune system v1 Osmoregulation v1

UniGene Fasta

>solea_v1.0_unigene19123
GGGGTAGAAAAAGGGGTCACTTGCGCGCGGCTGGATGGGATTTTATTAGTGCTGTTCCGCCCTCGCTGGAACCGGACTGTGTCTTTTTCGAACCTTTATTGGCGAATAACATCCTATAGTTTCCACTTCCTCTGGACTCGACAACCTGTGAGCCGCTGAATTCTTTTTCCCCCATCTGGAGATAAGACAACACAGGAGTGATGGCCACGTCTGAGCCGAGAGCCACCGGCGGGGACCAGGACCCCAACTCCGCCAATTTAAGACTTCCGTCCGCAACTAACGAATATGCGTGGATGCACGGATGCACACGGAAACTGGGGATGAAGATTTGTGGTTTCCTGCAGAAGAACAACAGCATGGAGGAGAAGGGGAGACTCTCCGGGCAGAAGAACTTGCTCTCGTGCGACAACAGTGACAGGGACGCGCGCTTCCGTCGCACTGAGACCGACTTCTCCAACCTGTTCGCCAGAGACTTGCTGCCGGCCAAAAATGGAGAAGAACCTACTATTCAGTTCCTGCTGGAGGTGGTCGACATCCTCACCAACTACGTCAGGAAGACTTTCGATCGCT

Ace file of the UniGene solea_v1.0_unigene19123

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	Q7ZUS3 tr=GAD67; Danio rerio (Zebrafish) (Brachydanio rerio).	-	-	0.0	70%
AutoFact	gad1, GAD67; glutamate decarboxylase 1 (EC:4.1.1.15); K01580 glutamate decarboxylase [EC:4.1.1.15]	-	-	2.00386e-43	70%
Blast2go	glutamate decarboxylase 1	-	-	3.15292e-43	74%

Source	ECs	Term	Type	e value	Identity
FL-2	glutamate decarboxylase	EC:4.1.1.15	-	2.00386e-43	70%

Source	KEGGs	Term	e value	Identity
FL-2	Alanine, aspartate and glutamate metabolism	00250	2.00386e-43	70%
FL-2	beta-Alanine metabolism	00410	2.00386e-43	70%
FL-2	Butanoate metabolism	00650	2.00386e-43	70%
FL-2	Metabolic pathways	01100	2.00386e-43	70%
FL-2	Biosynthesis of secondary metabolites	01110	2.00386e-43	70%
FL-2	Taurine and hypotaurine metabolism	00430	2.00386e-43	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	glutamate decarboxylase	EC:4.1.1.15	-	3.15292e-43	74%

Source	KEGGs	Term	e value	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	3.15292e-43	74%
Blast2go	beta-Alanine metabolism	00410	3.15292e-43	74%
Blast2go	Butanoate metabolism	00650	3.15292e-43	74%
Blast2go	Metabolic pathways	01100	3.15292e-43	74%
Blast2go	Biosynthesis of secondary metabolites	01110	3.15292e-43	74%
Blast2go	Taurine and hypotaurine metabolism	00430	3.15292e-43	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	axon	GO:0030424	Cellular Component	3.15292e-43	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.15292e-43	74%
Blast2go	synapse	GO:0045202	Cellular Component	3.15292e-43	74%
Blast2go	glutamate decarboxylase activity	GO:0004351	Molecular Function	3.15292e-43	74%
Blast2go	protein binding	GO:0005515	Molecular Function	3.15292e-43	74%
Blast2go	neurotransmitter biosynthetic process	GO:0042136	Biological Process	3.15292e-43	74%
Blast2go	gamma-aminobutyric acid biosynthetic process	GO:0009449	Biological Process	3.15292e-43	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	3.15292e-43	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: actinopterygii100.fasta

Fln subject: Q7ZUS3

Fln msg: Distance to subject end: 460 aas, your sequence is shorter than subject: 123 - 587

Fln protein: MATSEPRATGGDQDPNSANLRLPSATNEYAWMHGCTRKLGMKICGFLQKNNSMEEKGRLSGQKNLLSCDNSDRDARFRRTETDFSNLFARDLLPAKNGEEPTIQFLLEVVDILTNYVRKTFDR

Protein Length: 124

Fln nts: GGGGTAGAAAAAGGGGTCACTTGCGCGCGGCTGGATGGGATTTTATTAGTGCTGTTCCGCCCTCGCTGGAACCGGACTGTGTCTTTTTCGAACCTTTATTGGCGAATAACATCCTATAGTTTCCACTTCCTCTGGACTCGACAACCTGTGAGCCGCTGAATTCTTTTTCCCCCATCTGGAGATAAGACAACACAGGAGTG_-_ATGGCCACGTCTGAGCCGAGAGCCACCGGCGGGGACCAGGACCCCAACTCCGCCAATTTAAGACTTCCGTCCGCAACTAACGAATATGCGTGGATGCACGGATGCACACGGAAACTGGGGATGAAGATTTGTGGTTTCCTGCAGAAGAACAACAGCATGGAGGAGAAGGGGAGACTCTCCGGGCAGAAGAACTTGCTCTCGTGCGACAACAGTGACAGGGACGCGCGCTTCCGTCGCACTGAGACCGACTTCTCCAACCTGTTCGCCAGAGACTTGCTGCCGGCCAAAAATGGAGAAGAACCTACTATTCAGTTCCTGCTGGAGGTGGTCGACATCCTCACCAACTACGTCAGGAAGACTTTCGATCGCT

Fln Alignment:

Contig19123___MATSEPRATGGDQDPNSANLRLPSATNE--YAWMHGCTRKLGMKICGFLQKNNSMEEKGRLSGQ-----KNLLSCDNSDRDARFRRTETDFSNLFARDLLPAKNGEEPTIQFLLEVVDILTNYVRKTFDR
Q7ZUS3__________________MASSAPSSSAGDMDPNTANLRQPATTSDAWYGVAHGCTRKLGMKICGFLQKNNSLDEKSRMVGSFKESAKNQMSCDNNER---FTRDETDFSNLFARDLLPAKNGEEPTIQFLLEVVEILTNYVRKTFDR

Curation

No curations to show

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