SoleaDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: Immune System v1.0

UniGene Name: mmc_v1.0_unigene2

Length: 282 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>mmc_v1.0_unigene2
ATCCTTGGCCTTAGAGCTACGACCTGAGGCAAAGAACTTCAAAAACCTTCTTTGTTCACACGCCTAACCGAACATAACTATTTGATGGACCCCAGTGGAAATGCTGACAGATGGTGCAAGAAGATCCAGGAAGTGTGGAGAAAGATCTATCAGAGGCACCAAAACCCTGGCCTATAGGAGCACAGTTCCTCCTGTGGCCACTCCTCTTTAGCTCCGAGGCCAATCACTGAGCAGAGTAAAACCCTCTTTAGTGCCCTCATCACCGCAGTGTAAACAAACTCT

Ace file of the UniGene mmc_v1.0_unigene2 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v1.0 (global assembly)	solea_v1.0_unigene1110	2/2

Source	Descriptions	Term	Type	Identity
FL-Next	E6ZGW1 tr=3-phosphoinositide-dependent protein kinase 1; Dicentrarchus labrax (European seabass) (Morone labrax).	-	-	54%
AutoFact	3-phosphoinositide-dependent protein kinase 1 (Fragment) n=1 Tax=Salmo salar RepID=C0PUQ1_SALSA	-	-	95%
Blast2go	3-phosphoinositide-dependent protein kinase 1	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%
Blast2go	3-phosphoinositide-dependent protein kinase activity	GO:0004676	Molecular Function	96%
Blast2go	protein kinase binding	GO:0019901	Molecular Function	96%
Blast2go	insulin receptor binding	GO:0005158	Molecular Function	96%
Blast2go	peptidyl-threonine phosphorylation	GO:0018107	Biological Process	96%
Blast2go		GO:0023034	Biological Process	96%
Blast2go	cellular response to insulin stimulus	GO:0032869	Biological Process	96%
Blast2go	negative regulation of protein kinase activity	GO:0006469	Biological Process	96%
Blast2go	focal adhesion assembly	GO:0048041	Biological Process	96%
Blast2go	activation of protein kinase B activity	GO:0032148	Biological Process	96%
Blast2go	positive regulation of establishment of protein localization to plasma membrane	GO:0090004	Biological Process	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pleckstrin homology-like domain	IPR011993	-	0.0	96%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: actinopterygii100.fasta

Fln subject: E6ZGW1

Fln msg: Possible frame ERROR between 73 and 78, your sequence is shorter than subject: 59 - 564

Fln protein: PWP*SYDLRQRTSKTFFVHTPNRxxxYLMDPSGNADRWCKKIQEVWRKIYQRHQNPGL*

Protein Length: 60

Fln nts: ATCCTTGGCCTTAGAGCTACGACCTGAGGCAAAGAACTTCAAAAACCTTCTTTGTTCACACGCCTAACCGAACxxxxxxCTATTTGATGGACCCCAGTGGAAATGCTGACAGATGGTGCAAGAAGATCCAGGAAGTGTGGAGAAAGATCTATCAGAGGCACCAAAACCCTGGCCTATAGGAGCACAGTTCCTCCTGTGGCCACTCCTCTTTAGCTCCGAGGCCAATCACTGAGCAGAGTAAAACCCTCTTTAGTGCCCTCATCACCGCAGTGTAAACAAACTCT

Fln Alignment:

Contig2___PWP*SYDLRQRTSKTFFVHTPNRTxxYLMDPSGNADRWCKKIQEVWRKIYQRHQNPGL
E6ZGW1____________PWSLELRPEAKNFKTFFVHTPNRTxxYLMDPSGNADRWCKKIQEVWRKIYQRHQNPGL

Curation

No curations to show

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