SoleaDB

Assembly Name: Solea senegalensis v2.0 (global assembly)

UniGene Name: solea_v2.0_unigene53899

Length: 1769 nt

Origin of reads: Osmoregulation v1 Gonads v1 Hypophysis v1 Hypothalamus v1

UniGene Fasta

Ace file of the UniGene solea_v2.0_unigene53899

Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Catenin beta-1; Salmo salar (Atlantic salmon).	-	-	0.0	91%
Sma3	Junction plakoglobin	-	-	4.502e-16	-
AutoFact	Ctnnb1, Catnb, Mesc; catenin (cadherin associated protein), beta 1; K02105 catenin (cadherin-associated protein), beta 1	-	-	0.0	91%

Source	Gene names
Sma3	jup;

Source	GOs	Term	Type	e value	Identity
Sma3	cytosol	GO:0005829	Cellular Component	3.985e-07	-
Sma3	zonula adherens	GO:0005915	Cellular Component	2.856e-08	-
Sma3	fascia adherens	GO:0005916	Cellular Component	1.142e-08	-
Sma3	cytoplasmic side of plasma membrane	GO:0009898	Cellular Component	1.142e-08	-
Sma3	basolateral plasma membrane	GO:0016323	Cellular Component	4.504e-10	-
Sma3	catenin complex	GO:0016342	Cellular Component	2.892e-12	-
Sma3	Z disc	GO:0030018	Cellular Component	7.192e-07	-
Sma3	desmosome	GO:0030057	Cellular Component	3.305e-13	-
Sma3	Axin-APC-beta-catenin-GSK3B complex	GO:0034747	Cellular Component	4.627e-12	-
Sma3	specific RNA polymerase II transcription factor activity	GO:0003704	Molecular Function	5.559e-06	-
Sma3	binding	GO:0005488	Molecular Function	1.642e-14	-
Sma3	RPTP-like protein binding	GO:0042153	Molecular Function	1.142e-08	-
Sma3	alpha-catenin binding	GO:0045294	Molecular Function	1.904e-08	-
Sma3	cadherin binding	GO:0045296	Molecular Function	3.252e-06	-
Sma3	negative regulation of heart induction by canonical Wnt signaling pathway	GO:0003136	Biological Process	1.142e-08	-
Sma3	cytoskeletal anchoring at plasma membrane	GO:0007016	Biological Process	7.192e-07	-
Sma3	ectoderm development	GO:0007398	Biological Process	2.912e-07	-
Sma3	oocyte development	GO:0048599	Biological Process	6.853e-08	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo	IPR000225	-	8.784e-27	-
Sma3	Armadillo-like helical	IPR011989	-	8.618e-19	-
Sma3	Beta-catenin	IPR013284	-	2.223e-34	-
Sma3	Armadillo-type fold	IPR016024	-	1.498e-17	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: actinopterygii.fasta

Fln subject: C0HAA3

Fln msg: Distance to subject end: 248 aas, your sequence is shorter than subject: 526 - 780

Fln protein: MATQSDLMELDMAMGDSKAAVSQWQQQSYLDSGIQSGVTTTAPSLSGKGNPDAEEDDPSLYDWEFNQPFTPETTDIEGYAMTRAQRVRAAMFPETLEEGIQIPPTQLDAAHPTAVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHALMRSPQMVSAVVRAMQNTGDVETARCSAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLSNTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTFTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYSNKLMVCQVGGIEALVRTVLRAGDREDITEPAVCALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHSALREQGSH

Protein Length: 527

Fln nts: ATCGCATAGGCGGAAGCAGCATCTTCGGCGGAGCAGCCGCGGGTGTGGTTCGGACTCTCACGGGTGGTTCACCTCGCAGCGTTTTCCTATTTTCAGCCAAGAGAAAAGAGGAAATCTCCCTGACAAGAACCACGGAGGAGCCACTCGACTCTGACAAATCTGCTGTGCGGGCTCAGGGCAGGCAAGAACA_-_ATGGCTACCCAGTCTGATTTGATGGAGTTGGACATGGCAATGGGAGACAGTAAGGCTGCTGTGAGCCAATGGCAGCAGCAGTCTTACCTTGATTCAGGCATCCAGTCTGGAGTCACCACCACTGCACCATCTTTGAGTGGTAAGGGTAATCCTGATGCCGAGGAGGATGATCCATCTCTGTACGATTGGGAGTTCAACCAGCCCTTCACTCCCGAGACCACAGACATCGAGGGTTATGCCATGACTCGGGCCCAGCGCGTCCGAGCTGCCATGTTCCCTGAGACCTTGGAGGAGGGCATCCAGATCCCACCCACCCAACTGGATGCTGCTCACCCAACCGCAGTGCAGCGCCTGGCAGAACCCTCTCAGATGCTGAAGCATGCCGTCGTTAACCTAATTAACTATCAAGATGATGCCGAGCTGGCCACTCGTGCAATCCCAGAGCTAACCAAACTGCTCAATGATGAAGACCAGGTGGTTGTGAATAAAGCAGCTGTAATGGTTCATCAGTTGTCAAAGAAGGAGGCATCGCGACACGCCCTGATGCGTTCACCACAAATGGTTTCTGCAGTTGTTCGTGCTATGCAGAACACTGGTGATGTGGAGACGGCTCGTTGCTCTGCTGGCACCTTGCATAACCTGTCTCATCATCGTGAGGGGCTTCTTGCGATCTTTAAGTCTGGAGGCATCCCTGCCTTGGTCAAGATGCTGGGCTCACCAGTGGACAGTGTGTTGTTCTATGCCATCACTACACTCCACAATTTGTTGTTGCATCAAGAAGGGGCCAAGATGGCGGTGCGTCTCGCAGGCGGACTGCAGAAGATGGTTGCCCTGCTCTCAAACACCAACGTCAAGTTCCTGGCAATCACTACTGACTGCCTGCAGATCCTGGCATATGGCAATCAGGAAAGCAAGTTGATCATTTTGGCCAGCGGTGGCCCCCAAGCCCTGGTCAACATCATGAGGACATTCACATATGAGAAGCTGCTGTGGACCACAAGTAGAGTGCTTAAGGTGCTCTCAGTTTGCTCAAGCAATAAGCCTGCCATCGTAGAGGCTGGTGGCATGCAGGCCCTGGGGCTTCACCTGACAGACCCCAGCCAGCGTCTGGTCCAGAACTGTCTCTGGACACTAAGGAATCTTTCAGATGCTGCCACTAAACAGGAGGGAATGGAGGGTCTCTTAGGAACCCTTGTCCAGCTGCTGGGCAGTGATGACATCAACGTAGTGACCTGTGCTGCTGGCATCCTCTCCAACCTGACCTGCAACAACTATAGTAACAAACTCATGGTCTGCCAGGTTGGAGGCATTGAGGCTCTGGTGCGAACAGTGCTCCGTGCTGGTGACAGGGAGGACATCACAGAGCCAGCAGTCTGTGCCCTGCGCCACCTGACTTCTCGCCACCAGGATGCTGAGATGGCCCAGAATGCTGTGCGTCTTCATTACGGCTTGCCTGTGGTGGTCAAACTCCTGCACCCTCCCTCCCACTGGCCACTAATCAAGGCCACAGTTGGTTTGATCAGGAACCTGGCTCTTTGCCCAGCCAACCACAGTGCTCTGCGTGAGCAGGGGAGCCATA

Fln Alignment:

Contig53899___MATQSDLMELDMAMG-DSKAAVSQWQQQSYLDSGIQSGVTTTAPSLSGKGNPDAEE-DDPSLYDWE--FNQPFTPE-TTDIEG-YAMTRAQRVRAAMFPETLEEGIQIPPTQLDAAHPTAVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHALMRSPQMVSAVVRAMQNTGDVETARCSAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLSNTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTFTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYSNKLMVCQVGGIEALVRTVLRAGDREDITEPAVCALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHSALREQGS
C0HAA3__________________MASQSDLMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDNQVLYEWEQGFSQSFTQDQVSDIDGQYAMTRAQRVRAAMFPETLDEGMQLPSTQFDGAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA

SNPs (tot: 0)

Position	A %	C %	G %	T %	Probability
1257	66		33		0.997452
1301			75	25	0.996473
1302			75	25	0.996473
1331		25		75	0.996473
1358	20		80		0.995493
1471	83		16		0.994512

Curation

Back