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Assembly Name: Solea solea v1.0 (global assembly)

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
solea_solea_v1.0_unigene171 Solea solea v1.0 (global assembly) 18261
• Sma3: Low-density lipoprotein receptor-related protein 1 5.197e-08
• AutoFact: Unassigned protein
solea_solea_v1.0_unigene1488 Solea solea v1.0 (global assembly) 7642
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene1574 Solea solea v1.0 (global assembly) 10850
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Complete
solea_solea_v1.0_unigene1680 Solea solea v1.0 (global assembly) 7586
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene2469 Solea solea v1.0 (global assembly) 4160
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Vitellogenin receptor 2.016e-14
• AutoFact: Unassigned protein
N-terminus
solea_solea_v1.0_unigene2788 Solea solea v1.0 (global assembly) 8899
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene2971 Solea solea v1.0 (global assembly) 1652
• FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
• Sma3: Vitellogenin receptor 3.059e-13
• AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 0.0
Putative N-terminus
solea_solea_v1.0_unigene4323 Solea solea v1.0 (global assembly) 4690
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
solea_solea_v1.0_unigene6523 Solea solea v1.0 (global assembly) 4911
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• AutoFact: Unassigned protein
Complete
solea_solea_v1.0_unigene13103 Solea solea v1.0 (global assembly) 4933
• FL-Next: tr=Nidogen-1; nigroviridis). 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene13339 Solea solea v1.0 (global assembly) 4952
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Vitellogenin receptor 2.405e-20
• AutoFact: PREDICTED: similar to Low-density lipoprotein receptor precursor (LDL receptor) n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155CD51 0.0
Putative C-terminus
solea_solea_v1.0_unigene13340 Solea solea v1.0 (global assembly) 4956
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Vitellogenin receptor 2.405e-20
• AutoFact: PREDICTED: similar to Low-density lipoprotein receptor precursor (LDL receptor) n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155CD51 0.0
Putative C-terminus
solea_solea_v1.0_unigene13341 Solea solea v1.0 (global assembly) 4935
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: PREDICTED: similar to Low-density lipoprotein receptor precursor (LDL receptor) n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155CD51 0.0
Putative C-terminus
solea_solea_v1.0_unigene17989 Solea solea v1.0 (global assembly) 19419
• Sma3: Low-density lipoprotein receptor-related protein 1 9.245e-08
• AutoFact: Unassigned protein
solea_solea_v1.0_unigene18149 Solea solea v1.0 (global assembly) 8792
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Complete
solea_solea_v1.0_unigene18188 Solea solea v1.0 (global assembly) 14990
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene19645 Solea solea v1.0 (global assembly) 4141
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Chromosome 12 SCAF14692, whole genome shotgun sequence. 1.203e-06
• AutoFact: Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains n=2 Tax=Danio rerio RepID=A2ARH3_DANRE 0.0
N-terminus
solea_solea_v1.0_unigene20048 Solea solea v1.0 (global assembly) 9042
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Complete
solea_solea_v1.0_unigene20698 Solea solea v1.0 (global assembly) 4469
• FL-Next: tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
• Sma3: Vitellogenin receptor 8.63e-20
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene21198 Solea solea v1.0 (global assembly) 3964
• FL-Next: tr=Chromosome 1 SCAF14603, whole genome shotgun sequence; nigroviridis). 0.0
• AutoFact: Unassigned protein
Complete

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain