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Assembly Name: Solea solea v1.0 (global assembly)

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
solea_solea_v1.0_unigene26775 Solea solea v1.0 (global assembly) 7982
• FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; nigroviridis). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 1 3.326e-13
• AutoFact: LRP1 (Fragment) n=7 Tax=Percomorpha RepID=O73809_TAKRU 0.0
Putative C-terminus
solea_solea_v1.0_unigene26859 Solea solea v1.0 (global assembly) 8745
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene28519 Solea solea v1.0 (global assembly) 5544
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: Unassigned protein
Complete
solea_solea_v1.0_unigene29337 Solea solea v1.0 (global assembly) 5884
• Sma3: Vitellogenin receptor 1.82e-19
• AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 0.0
solea_solea_v1.0_unigene29938 Solea solea v1.0 (global assembly) 13999
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Low-density lipoprotein receptor-related protein 1B n=61 Tax=Theria RepID=LRP1B_HUMAN 0.0
Putative Complete
solea_solea_v1.0_unigene30072 Solea solea v1.0 (global assembly) 503
• FL-Next: tr=Uncharacterized protein; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
• AutoFact: Unassigned protein
Internal
solea_solea_v1.0_unigene33273 Solea solea v1.0 (global assembly) 4341
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Vitellogenin receptor 2.107e-20
• AutoFact: PREDICTED: similar to Low-density lipoprotein receptor precursor (LDL receptor) n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155CD51 0.0
Putative Complete
solea_solea_v1.0_unigene42316 Solea solea v1.0 (global assembly) 14957
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene42546 Solea solea v1.0 (global assembly) 4799
• FL-Next: tr=Nidogen-1; nigroviridis). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Putative C-terminus
solea_solea_v1.0_unigene42551 Solea solea v1.0 (global assembly) 6061
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: Unassigned protein
Internal
solea_solea_v1.0_unigene42703 Solea solea v1.0 (global assembly) 8820
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene46901 Solea solea v1.0 (global assembly) 191
• Sma3: Uncharacterized protein 9.347e-11
unknown
solea_solea_v1.0_unigene48242 Solea solea v1.0 (global assembly) 3960
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
solea_solea_v1.0_unigene48539 Solea solea v1.0 (global assembly) 254
• Sma3: Uncharacterized protein 5.155e-14
Sure coding
solea_solea_v1.0_unigene49558 Solea solea v1.0 (global assembly) 14269
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Dicentrarchus labrax (European seabass) (Morone labrax). 2.0e-16
• Sma3: Low-density lipoprotein receptor-related protein 2 0.0
• AutoFact: Unassigned protein
Complete
solea_solea_v1.0_unigene51566 Solea solea v1.0 (global assembly) 4320
• FL-Next: tr=Nidogen-1; nigroviridis). 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene51567 Solea solea v1.0 (global assembly) 4594
• FL-Next: tr=Nidogen-1; nigroviridis). 0.0
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene51712 Solea solea v1.0 (global assembly) 16294
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 1 3.367e-08
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene51713 Solea solea v1.0 (global assembly) 20977
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Formin-like protein 1 2.735e-08
• AutoFact: Unassigned protein
Putative Complete
solea_solea_v1.0_unigene55117 Solea solea v1.0 (global assembly) 4934
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Unassigned protein
Putative Complete

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain