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Assembly Name: Solea senegalensis v3.0 (global assembly)

Name: Retinoid X receptor/HNF4

Term: IPR000003  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
solea_v3.0_unigene4765 Solea senegalensis v3.0 (global assembly) 207
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Retinoid X receptor beta 1.505e-16
• AutoFact: Nuclear receptor subfamily 2, group C, member 1 n=3 Tax=Danio rerio RepID=Q503E0_DANRE 1.0e-23
Internal
solea_v3.0_unigene12528 Solea senegalensis v3.0 (global assembly) 1398
• FL-Next: tr=Hepatocyte nuclear factor 4 alpha; Sparus aurata (Gilthead sea bream). 0.0
• Sma3: Retinoid X receptor gamma 1.547e-10
• AutoFact: Hnf4a protein n=8 Tax=Clupeocephala RepID=Q6PHH5_DANRE 0.0
Putative Complete
solea_v3.0_unigene16793 Solea senegalensis v3.0 (global assembly) 395
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Retinoic acid receptor alpha 1.915e-16
• AutoFact: PREDICTED: nuclear receptor subfamily 2, group C, member 2 isoform 1 n=2 Tax=Pan troglodytes RepID=UPI0000E1FB4E 0.0
Internal
solea_v3.0_unigene22882 Solea senegalensis v3.0 (global assembly) 933
• FL-Next: tr='Hepatocyte nuclear factor 4, gamma'; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
• Sma3: Hepatocyte nuclear factor 4-alpha 3.571e-09
• AutoFact: 'Hepatocyte nuclear factor 4, gamma' n=2 Tax=Percomorpha RepID=E6ZIG6_DICLA 0.0
C-terminus
solea_v3.0_unigene23313 Solea senegalensis v3.0 (global assembly) 665
• FL-Next: tr=Uncharacterized protein; nigroviridis). 0.0
• Sma3: Retinoid X receptor gamma 6.089e-11
• AutoFact: COUP transcription factor 1 n=47 Tax=Deuterostomia RepID=COT1_HUMAN 0.0
C-terminus
solea_v3.0_unigene23751 Solea senegalensis v3.0 (global assembly) 807
• FL-Next: tr='Hepatocyte nuclear factor 4, gamma'; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
• Sma3: Retinoid X receptor gamma 2.909e-14
• AutoFact: 'Hepatocyte nuclear factor 4, gamma' n=2 Tax=Percomorpha RepID=E6ZIG6_DICLA 0.0
N-terminus
solea_v3.0_unigene24234 Solea senegalensis v3.0 (global assembly) 907
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Retinoid X receptor gamma 4.586e-11
• AutoFact: Retinoid X receptor gamma n=1 Tax=Sebastiscus marmoratus RepID=B5TEI1_9PERC 0.0
C-terminus
solea_v3.0_unigene28846 Solea senegalensis v3.0 (global assembly) 1774
• FL-Next: tr=Retinoid X receptor beta; Lateolabrax japonicus (Japanese sea perch) (Japanese sea bass). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Retinoid x receptor beta a (Fragment) n=1 Tax=Salmo salar RepID=B5RI69_SALSA 0.0
Complete
solea_v3.0_unigene38626 Solea senegalensis v3.0 (global assembly) 266
• FL-Next: tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
• Sma3: Retinoid X receptor gamma 3.245e-12
• AutoFact: Retinoid X receptor gamma n=1 Tax=Sebastiscus marmoratus RepID=B5TEI1_9PERC 8.0e-22
Internal
solea_v3.0_unigene40712 Solea senegalensis v3.0 (global assembly) 371
• FL-Next: tr=FTZ-F1; Carassius auratus (Goldfish). 0.0
• Sma3: FTZ-F1 4.327e-23
• AutoFact: Fushi tarazu factor 1 n=2 Tax=Oncorhynchus mykiss RepID=Q5EIB4_ONCMY 0.0
N-terminus
solea_v3.0_unigene41129 Solea senegalensis v3.0 (global assembly) 428
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Retinoid X receptor gamma 1.729e-11
• AutoFact: Retinoid X receptor (Fragment) n=1 Tax=Oreochromis niloticus RepID=Q7T3J3_ORENI 0.0
Internal
solea_v3.0_unigene46355 Solea senegalensis v3.0 (global assembly) 1155
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Retinoid X receptor beta 1.359e-17
• AutoFact: Retinoid X receptor beta (Fragment) n=12 Tax=Euteleostei RepID=B5TEI2_9PERC 0.0
N-terminus
solea_v3.0_unigene71621 Solea senegalensis v3.0 (global assembly) 259
• FL-Next: tr=Hepatocyte nuclear factor 4 alpha; Sparus aurata (Gilthead sea bream). 0.0
• Sma3: Hepatocyte nuclear factor 4-alpha 1.413e-09
• AutoFact: Hepatocyte nuclear factor 4 alpha (Fragment) n=1 Tax=Oreochromis mossambicus RepID=C3PUN3_OREMO 3.0e-17
Internal
solea_v3.0_unigene85671 Solea senegalensis v3.0 (global assembly) 490
• FL-Next: tr=Uncharacterized protein; nigroviridis). 0.0
• Sma3: Retinoid X receptor beta 9.986e-16
• AutoFact: Retinoid X receptor (Fragment) n=1 Tax=Oreochromis niloticus RepID=Q7T3J3_ORENI 3.0e-17
Internal
solea_v3.0_unigene98211 Solea senegalensis v3.0 (global assembly) 237
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Retinoid X receptor gamma 1.471e-15
• AutoFact: Retinoid x receptor beta a (Fragment) n=1 Tax=Salmo salar RepID=B5RI69_SALSA 1.0e-16
Internal
solea_v3.0_unigene124328 Solea senegalensis v3.0 (global assembly) 296
• Sma3: Retinoid X receptor 1.672e-19
putative_coding
solea_v3.0_unigene178362 Solea senegalensis v3.0 (global assembly) 219
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Retinoid X receptor gamma 4.539e-15
• AutoFact: retinoic acid receptor RXR-alpha-like 2.0e-11
Internal
solea_v3.0_unigene182175 Solea senegalensis v3.0 (global assembly) 512
• FL-Next: tr=RXRB protein; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
• Sma3: Retinoic acid receptor RXR-gamma 4.487e-09
• AutoFact: Retinoic acid receptor RXR-beta-A n=4 Tax=Clupeocephala RepID=RXRBA_DANRE 3.0e-20
C-terminus
solea_v3.0_unigene214223 Solea senegalensis v3.0 (global assembly) 309
• FL-Next: tr=Uncharacterized protein; nigroviridis). 0.0
• Sma3: 'Hepatocyte nuclear factor 4, gamma' 7.285e-06
• AutoFact: Unassigned protein
Putative N-terminus
solea_v3.0_unigene225572 Solea senegalensis v3.0 (global assembly) 249
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Retinoid X receptor beta 7.157e-16
• AutoFact: Nuclear receptor subfamily 2, group F, member 6 n=2 Tax=Xenopus RepID=Q6GL59_XENTR 2.0e-33
Internal

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain