Logo_sudoe_cb Cabecera_solea2 Img_right
HomeAssembliesBLASTSearchInstitutions

Assembly Name: Solea senegalensis v3.0 (global assembly)

Name: PAS domain

Term: IPR000014  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
solea_v3.0_unigene262 Solea senegalensis v3.0 (global assembly) 363
FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
Sma3: Aryl hydrocarbon receptor 3.799e-09
AutoFact: UPI00016E697C related cluster n=2 Tax=Takifugu rubripes RepID=UPI00016E697C 4.0e-28
Internal
solea_v3.0_unigene557 Solea senegalensis v3.0 (global assembly) 321
FL-Next: tr=Uncharacterized protein; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
AutoFact: phosphodiesterase 8A; K01120 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] 1.0e-07
Internal
solea_v3.0_unigene3956 Solea senegalensis v3.0 (global assembly) 539
FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
Sma3: Period 2 circadian clock protein 5.27e-06
AutoFact: per2, fj43b09, wu:fj43b09; period homolog 2 (Drosophila); K02633 period circadian protein 4.0e-13
Internal
solea_v3.0_unigene4552 Solea senegalensis v3.0 (global assembly) 492
FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
Sma3: Period 2 circadian clock protein 3.72e-06
AutoFact: Period 2 circadian clock protein n=8 Tax=Cyprinidae RepID=Q7T1C9_DANRE 2.0e-19
Internal
solea_v3.0_unigene4861 Solea senegalensis v3.0 (global assembly) 1279
Sma3: Hypoxia-inducible factor 1 alpha 0.0
AutoFact: Hypoxia-inducible factor 1 alpha n=3 Tax=Percidae RepID=A5H734_PERFL 5.0e-23
solea_v3.0_unigene7959 Solea senegalensis v3.0 (global assembly) 175
FL-Next: tr=Chromosome 16 SCAF14974, whole genome shotgun sequence; nigroviridis). 0.0
Sma3: Period 1 1.01e-21
AutoFact: Per2, mKIAA0347, mPer2; period homolog 2 (Drosophila); K02633 period circadian protein 3.0e-13
Internal
solea_v3.0_unigene15509 Solea senegalensis v3.0 (global assembly) 252
FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
Sma3: Period 1 1.464e-21
AutoFact: per2, fj43b09, wu:fj43b09; period homolog 2 (Drosophila); K02633 period circadian protein 3.0e-30
Internal
solea_v3.0_unigene17605 Solea senegalensis v3.0 (global assembly) 882
FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
Sma3: Potassium voltage-gated channel subfamily H member 2 4.797e-13
AutoFact: potassium voltage-gated channel, subfamily H, member 7-like; K04910 potassium voltage-gated channel Eag-related subfamily H member 7 0.0
Internal
solea_v3.0_unigene19579 Solea senegalensis v3.0 (global assembly) 1986
Sma3: Period 1 2.41e-22
AutoFact: Period 1 n=1 Tax=Dicentrarchus labrax RepID=F1A8E8_DICLA 0.0
solea_v3.0_unigene19853 Solea senegalensis v3.0 (global assembly) 404
FL-Next: tr=Aryl hydrocarbon receptor repressor; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: Aryl hydrocarbon receptor repressor 2.827e-18
AutoFact: Aryl hydrocarbon receptor repressor n=1 Tax=Dicentrarchus labrax RepID=E6ZI91_DICLA 0.0
Putative C-terminus
solea_v3.0_unigene20334 Solea senegalensis v3.0 (global assembly) 256
FL-Next: tr=Aryl hydrocarbon receptor 2; Pagrus major (Red sea bream) (Chrysophrys major). 0.0
Sma3: Aryl hydrocarbon receptor 2 4.122e-40
AutoFact: Aryl hydrocarbon receptor 2 n=1 Tax=Pagrus major RepID=Q4LER2_PAGMA 9.0e-24
Internal
solea_v3.0_unigene20475 Solea senegalensis v3.0 (global assembly) 203
FL-Next: tr=Uncharacterized protein; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
AutoFact: similar to cAMP-specific cyclic nucleotide phosphodiesterase PDE8A1; K01120 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] 6.0e-13
C-terminus
solea_v3.0_unigene20902 Solea senegalensis v3.0 (global assembly) 280
FL-Next: tr=Aryl hydrocarbon receptor 2B; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
AutoFact: Aryl hydrocarbon receptor 2B n=4 Tax=Tetraodontidae RepID=Q4JHL3_TAKRU 2.0e-15
Internal
solea_v3.0_unigene21873 Solea senegalensis v3.0 (global assembly) 287
FL-Next: tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
Sma3: Nuclear receptor coactivator 2 1.642e-09
AutoFact: Unassigned protein
C-terminus
solea_v3.0_unigene22391 Solea senegalensis v3.0 (global assembly) 1192
FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
Sma3: Nuclear receptor coactivator 2 4.14e-20
AutoFact: Nuclear receptor coactivator 2 n=1 Tax=Dicentrarchus labrax RepID=E6ZIN5_DICLA 0.0
N-terminus
solea_v3.0_unigene22543 Solea senegalensis v3.0 (global assembly) 863
FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
AutoFact: PDE8A; phosphodiesterase 8A; K01120 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] 0.0
Putative N-terminus
solea_v3.0_unigene22742 Solea senegalensis v3.0 (global assembly) 529
FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
AutoFact: npas2, zfCLOCK2; neuronal PAS domain protein 2; K02223 circadian locomoter output cycles kaput protein [EC:2.3.1.48] 3.0e-13
Internal
solea_v3.0_unigene25767 Solea senegalensis v3.0 (global assembly) 132
FL-Next: tr=Uncharacterized protein; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
Sma3: Period 4 5.235e-16
AutoFact: Period homolog 1 n=1 Tax=Oryzias latipes RepID=B3Y055_ORYLA 6.0e-12
Internal
solea_v3.0_unigene26474 Solea senegalensis v3.0 (global assembly) 487
FL-Next: tr=Hypoxia-inducible factor 2 alpha; Micropogonias undulatus (Atlantic croaker). 0.0
Sma3: Hypoxia-inducible factor 2 alpha 3.934e-17
AutoFact: Hypoxia-inducible factor 2 alpha n=1 Tax=Micropogonias undulatus RepID=Q2ESI0_MICUN 0.0
Internal
solea_v3.0_unigene26626 Solea senegalensis v3.0 (global assembly) 532
FL-Next: tr=Hypoxia-inducible factor 2 alpha; Micropogonias undulatus (Atlantic croaker). 0.0
Sma3: Hypoxia inducible factor 2 alpha 2.172e-14
AutoFact: Hypoxia-inducible factor 2 alpha n=1 Tax=Micropogonias undulatus RepID=Q2ESI0_MICUN 0.0
Internal

Go to Annotations List

Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain