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Assembly Name: Solea senegalensis v3.0 (global assembly)

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
solea_v3.0_unigene31 Solea senegalensis v3.0 (global assembly) 273
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: low density lipoprotein receptor related protein-deleted in tumor 1.0e-16
Internal
solea_v3.0_unigene3489 Solea senegalensis v3.0 (global assembly) 511
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch211-181p13.1 2.935e-09
• AutoFact: low density lipoprotein receptor related protein-deleted in tumor 3.0e-32
Internal
solea_v3.0_unigene3637 Solea senegalensis v3.0 (global assembly) 307
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Si:ch211-181p13.1 2.935e-09
• AutoFact: low density lipoprotein-related protein 1-like 3.99931e-42
Internal
solea_v3.0_unigene5571 Solea senegalensis v3.0 (global assembly) 316
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 2 6.741e-10
• AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 1.4013e-45
Internal
solea_v3.0_unigene6612 Solea senegalensis v3.0 (global assembly) 498
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch211-181p13.1 4.128e-09
• AutoFact: low density lipoprotein-related protein 1-like 0.0
Internal
solea_v3.0_unigene10133 Solea senegalensis v3.0 (global assembly) 705
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch211-181p13.1 3.552e-09
• AutoFact: low-density lipoprotein receptor-related protein 1-like 0.0
Internal
solea_v3.0_unigene10317 Solea senegalensis v3.0 (global assembly) 1173
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 1 3.645e-09
• AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
C-terminus
solea_v3.0_unigene11862 Solea senegalensis v3.0 (global assembly) 2151
• FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; nigroviridis). 0.0
• Sma3: Vitellogenin receptor 1.15e-08
• AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
Internal
solea_v3.0_unigene11900 Solea senegalensis v3.0 (global assembly) 2055
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: Unassigned protein
C-terminus
solea_v3.0_unigene13423 Solea senegalensis v3.0 (global assembly) 566
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Novel protein similar to vertebrate low density lipoprotein-related protein 1B (Deleted in tumors) (LRP1B) 9.225e-12
• AutoFact: LRP1; low density lipoprotein receptor-related protein 1; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
Internal
solea_v3.0_unigene14310 Solea senegalensis v3.0 (global assembly) 1148
• FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; nigroviridis). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 1 4.088e-09
• AutoFact: LRP1 (Fragment) n=7 Tax=Percomorpha RepID=O73809_TAKRU 0.0
C-terminus
solea_v3.0_unigene15067 Solea senegalensis v3.0 (global assembly) 1182
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch211-181p13.1 9.734e-09
• AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
Internal
solea_v3.0_unigene15154 Solea senegalensis v3.0 (global assembly) 934
• FL-Next: tr=Uncharacterized protein; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
• AutoFact: PREDICTED: low-density lipoprotein receptor-related protein 8-like n=1 Tax=Danio rerio RepID=UPI0002026FA6 3.0e-05
Putative Complete
solea_v3.0_unigene16028 Solea senegalensis v3.0 (global assembly) 214
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Si:ch211-181p13.1 5.947e-09
• AutoFact: low-density lipoprotein receptor-related protein 1-like 2.0e-27
Internal
solea_v3.0_unigene16500 Solea senegalensis v3.0 (global assembly) 322
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch211-181p13.1 2.918e-09
• AutoFact: low density lipoprotein-related protein 1-like 0.0
Internal
solea_v3.0_unigene18346 Solea senegalensis v3.0 (global assembly) 845
• FL-Next: tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
• Sma3: Low density lipoprotein receptor 1.245e-11
• AutoFact: LDLR; low density lipoprotein receptor; K12473 low-density lipoprotein receptor 0.0
Internal
solea_v3.0_unigene19115 Solea senegalensis v3.0 (global assembly) 972
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Nidogen 2b (osteonidogen) 7.361e-09
• AutoFact: Nidogen-1 n=3 Tax=Percomorpha RepID=D9IEW6_TETNG 0.0
C-terminus
solea_v3.0_unigene19535 Solea senegalensis v3.0 (global assembly) 647
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Vitellogenin receptor 1.692e-14
• AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 0.0
Internal
solea_v3.0_unigene20866 Solea senegalensis v3.0 (global assembly) 263
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Si:dkey-88l16.3 7.285e-06
• AutoFact: fi30e01, wu:fi30e01; si:dkey-88l16.3 1.0e-23
Internal
solea_v3.0_unigene21392 Solea senegalensis v3.0 (global assembly) 660
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Vitellogenin receptor 1.414e-12
• AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 0.0
Putative N-terminus

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain