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Assembly Name: Solea senegalensis v3.0 (global assembly)

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
solea_v3.0_unigene21476 Solea senegalensis v3.0 (global assembly) 313
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Low density lipoprotein receptor-related protein 6 1.085e-09
• AutoFact: PREDICTED: low-density lipoprotein receptor-related protein 5-like n=2 Tax=Phasianidae RepID=UPI000203579D 2.0e-25
Internal
solea_v3.0_unigene23257 Solea senegalensis v3.0 (global assembly) 231
• FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; nigroviridis). 0.0
• AutoFact: Unassigned protein
Internal
solea_v3.0_unigene24388 Solea senegalensis v3.0 (global assembly) 642
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch211-181p13.1 4.536e-09
• AutoFact: Low-density lipoprotein receptor-related protein 1B n=61 Tax=Theria RepID=LRP1B_HUMAN 0.0
Internal
solea_v3.0_unigene25276 Solea senegalensis v3.0 (global assembly) 519
• FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
• Sma3: Vitellogenin receptor 6.251e-24
• AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 4.0e-38
C-terminus
solea_v3.0_unigene25997 Solea senegalensis v3.0 (global assembly) 807
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 2 8.265e-09
• AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 0.0
Internal
solea_v3.0_unigene26779 Solea senegalensis v3.0 (global assembly) 630
• Sma3: Low-density lipoprotein receptor-related protein 2 4.029e-09
• AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 0.0
solea_v3.0_unigene28086 Solea senegalensis v3.0 (global assembly) 426
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Heparan sulfate proteoglycan 2 2.0e-08
• AutoFact: basement membrane-specific heparan sulfate proteoglycan core protein-like 3.0e-35
Internal
solea_v3.0_unigene28743 Solea senegalensis v3.0 (global assembly) 571
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: Unassigned protein
Internal
solea_v3.0_unigene29612 Solea senegalensis v3.0 (global assembly) 307
• FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
• Sma3: Vitellogenin receptor 1.482e-20
• AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 4.0e-23
N-terminus
solea_v3.0_unigene36239 Solea senegalensis v3.0 (global assembly) 316
• FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
• Sma3: Vitellogenin receptor 5.341e-16
• AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 0.0
Internal
solea_v3.0_unigene40359 Solea senegalensis v3.0 (global assembly) 569
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Novel protein similar to vertebrate low density lipoprotein-related protein 1B (Deleted in tumors) (LRP1B) 2.556e-08
• AutoFact: low density lipoprotein receptor related protein-deleted in tumor 0.0
Internal
solea_v3.0_unigene40968 Solea senegalensis v3.0 (global assembly) 552
• FL-Next: tr=Uncharacterized protein; nigroviridis). 0.0
• AutoFact: similar to mosaic protein LR11 0.0
Internal
solea_v3.0_unigene41497 Solea senegalensis v3.0 (global assembly) 428
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch211-181p13.1 1.149e-08
• AutoFact: LRP1; low density lipoprotein receptor-related protein 1; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
Internal
solea_v3.0_unigene42317 Solea senegalensis v3.0 (global assembly) 251
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Si:ch211-181p13.1 4.128e-09
• AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 1.0e-38
Internal
solea_v3.0_unigene42424 Solea senegalensis v3.0 (global assembly) 831
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 1 2.014e-09
• AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
Internal
solea_v3.0_unigene42607 Solea senegalensis v3.0 (global assembly) 221
• FL-Next: tr=Apolipoprotein E receptor 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Apolipoprotein E receptor 2 8.179e-10
• AutoFact: very low-density lipoprotein receptor-like 1.0e-18
C-terminus
solea_v3.0_unigene43148 Solea senegalensis v3.0 (global assembly) 1585
• FL-Next: tr=Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains n=2 Tax=Danio rerio RepID=A2ARH3_DANRE 0.0
C-terminus
solea_v3.0_unigene46671 Solea senegalensis v3.0 (global assembly) 650
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:dkey-184d2.1 7.742e-10
• AutoFact: low density lipoprotein receptor related protein-deleted in tumor 0.0
C-terminus
solea_v3.0_unigene47158 Solea senegalensis v3.0 (global assembly) 336
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 2 1.544e-09
• AutoFact: PREDICTED: low-density lipoprotein receptor-related protein 4-like n=1 Tax=Pongo abelii RepID=UPI0001D5F9D7 9.0e-37
Internal
solea_v3.0_unigene48726 Solea senegalensis v3.0 (global assembly) 498
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: Ldl_recept_a domain containing protein 1.0e-13
N-terminus

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain