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Assembly Name: Solea senegalensis v3.0 (global assembly)

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
solea_v3.0_unigene243468 Solea senegalensis v3.0 (global assembly) 270
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Novel protein similar to vertebrate low density lipoprotein-related protein 1B (Deleted in tumors) (LRP1B) 1.162e-08
• AutoFact: low density lipoprotein receptor related protein-deleted in tumor 2.0e-34
Internal
solea_v3.0_unigene243531 Solea senegalensis v3.0 (global assembly) 98
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
• AutoFact: Unassigned protein
Internal
solea_v3.0_unigene243759 Solea senegalensis v3.0 (global assembly) 184
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: low density lipoprotein receptor related protein-deleted in tumor 5.0e-24
Internal
solea_v3.0_unigene244057 Solea senegalensis v3.0 (global assembly) 340
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 2 1.095e-09
• AutoFact: Low-density lipoprotein receptor-related protein 2 n=1 Tax=Dicentrarchus labrax RepID=E6ZH88_DICLA 0.0
Internal
solea_v3.0_unigene244200 Solea senegalensis v3.0 (global assembly) 325
• FL-Next: tr=Chromosome 2 SCAF15106, whole genome shotgun sequence; nigroviridis). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 2 1.095e-09
• AutoFact: LRP2; low density lipoprotein receptor-related protein 2; K06233 low density lipoprotein-related protein 2 1.0e-34
Internal
solea_v3.0_unigene244235 Solea senegalensis v3.0 (global assembly) 279
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 2 4.371e-09
• AutoFact: Low-density lipoprotein receptor-related protein 2 n=1 Tax=Dicentrarchus labrax RepID=E6ZH88_DICLA 2.99878e-43
Internal
solea_v3.0_unigene244280 Solea senegalensis v3.0 (global assembly) 321
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: fi30e01, wu:fi30e01; si:dkey-88l16.3 5.0e-34
Internal
solea_v3.0_unigene244454 Solea senegalensis v3.0 (global assembly) 288
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Low density lipoprotein receptor-related protein 6 1.055e-08
• AutoFact: similar to low density lipoprotein receptor-related protein 5; K03068 low density lipoprotein receptor-related protein 5/6 2.94273e-44
Internal
solea_v3.0_unigene244873 Solea senegalensis v3.0 (global assembly) 277
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
• Sma3: Low-density lipoprotein receptor-related protein 2 6.985e-10
• AutoFact: Low-density lipoprotein receptor-related protein 2 n=1 Tax=Dicentrarchus labrax RepID=E6ZH88_DICLA 2.0e-40
Internal
solea_v3.0_unigene245008 Solea senegalensis v3.0 (global assembly) 235
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
• AutoFact: Low-density lipoprotein receptor-related protein 2 n=1 Tax=Dicentrarchus labrax RepID=E6ZH88_DICLA 1.0e-31
Internal
solea_v3.0_unigene245043 Solea senegalensis v3.0 (global assembly) 294
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: low density lipoprotein receptor-related protein 4-like 2.0e-24
Internal
solea_v3.0_unigene245320 Solea senegalensis v3.0 (global assembly) 146
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• AutoFact: LRP4; low density lipoprotein receptor-related protein 4 3.0e-18
Internal
solea_v3.0_unigene245715 Solea senegalensis v3.0 (global assembly) 159
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
• AutoFact: Low-density lipoprotein receptor-related protein 2 n=1 Tax=Dicentrarchus labrax RepID=E6ZH88_DICLA 1.0e-18
Internal
solea_v3.0_unigene245883 Solea senegalensis v3.0 (global assembly) 172
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch211-181p13.1 2.346e-09
• AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 6.0e-17
Internal
solea_v3.0_unigene245986 Solea senegalensis v3.0 (global assembly) 79
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 1.0e-08
Internal
solea_v3.0_unigene246063 Solea senegalensis v3.0 (global assembly) 97
• FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: Unassigned protein
Internal
solea_v3.0_unigene246253 Solea senegalensis v3.0 (global assembly) 140
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Si:ch73-60e21.3 7.13e-06
• AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 6.0e-11
Internal
solea_v3.0_unigene246973 Solea senegalensis v3.0 (global assembly) 299
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Vitellogenin receptor 6.242e-22
• AutoFact: PREDICTED: similar to Low-density lipoprotein receptor precursor (LDL receptor) n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155CD51 3.0e-37
Internal
solea_v3.0_unigene247072 Solea senegalensis v3.0 (global assembly) 254
• FL-Next: tr=Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Si:dkey-88l16.3 8.836e-06
• AutoFact: Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains n=2 Tax=Danio rerio RepID=A2ARH3_DANRE 3.0e-20
Internal
solea_v3.0_unigene247334 Solea senegalensis v3.0 (global assembly) 214
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: Unassigned protein
Internal

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain