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Assembly Name: Hypothalamus m-wt v1.0

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
hpt_m_wt_v1.0_unigene7890 Hypothalamus m-wt v1.0 457
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: PREDICTED: low-density lipoprotein receptor-related protein 1 n=1 Tax=Danio rerio RepID=UPI0002027320 0.0
C-terminus
hpt_m_wt_v1.0_unigene7995 Hypothalamus m-wt v1.0 418
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Low-density lipoprotein receptor-related protein 1 9.467e-10
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 1.96182e-44
Internal
hpt_m_wt_v1.0_unigene8725 Hypothalamus m-wt v1.0 221
FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
Sma3: Vitellogenin receptor 5.322e-20
AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 2.0e-32
C-terminus
hpt_m_wt_v1.0_unigene11035 Hypothalamus m-wt v1.0 295
FL-Next: tr=Nidogen-1; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: PREDICTED: nidogen 1 n=1 Tax=Taeniopygia guttata RepID=UPI000194C1E5 2.0e-09
Internal
hpt_m_wt_v1.0_unigene13315 Hypothalamus m-wt v1.0 366
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: LRP1 (Fragment) n=7 Tax=Percomorpha RepID=O73809_TAKRU 3.0e-40
Internal
hpt_m_wt_v1.0_unigene13644 Hypothalamus m-wt v1.0 145
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: Unassigned protein
C-terminus
hpt_m_wt_v1.0_unigene13696 Hypothalamus m-wt v1.0 193
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Si:ch211-181p13.1 2.392e-09
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 3.0e-28
Internal
hpt_m_wt_v1.0_unigene15366 Hypothalamus m-wt v1.0 223
FL-Next: tr=Chromosome 11 SCAF14979, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Low-density lipoprotein receptor-related protein 1 3.758e-09
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 2.0e-29
Internal
hpt_m_wt_v1.0_unigene16780 Hypothalamus m-wt v1.0 302
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:ch211-181p13.1 3.721e-09
AutoFact: low density lipoprotein receptor related protein-deleted in tumor 2.0e-28
Internal
hpt_m_wt_v1.0_unigene18966 Hypothalamus m-wt v1.0 129
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 6.0e-06
Internal
hpt_m_wt_v1.0_unigene19372 Hypothalamus m-wt v1.0 147
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: nid2a, nid2; nidogen 2a (osteonidogen); K06826 nidogen (entactin) 2.0e-11
Internal

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain