Logo_sudoe_cb Cabecera_solea2 Img_right
HomeAssembliesBLASTSearchInstitutions

Assembly Name: Ovary wt v1.0

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
ovary_wt_v1.0_unigene2009 Ovary wt v1.0 437
FL-Next: tr=Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:dkey-88l16.3 6.975e-06
AutoFact: fi30e01, wu:fi30e01; si:dkey-88l16.3 2.0e-33
Internal
ovary_wt_v1.0_unigene2893 Ovary wt v1.0 976
FL-Next: tr=Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains n=2 Tax=Danio rerio RepID=A2ARH3_DANRE 0.0
Putative C-terminus
ovary_wt_v1.0_unigene2988 Ovary wt v1.0 487
FL-Next: tr=Chromosome 11 SCAF14979, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Low-density lipoprotein receptor-related protein 1 1.299e-09
AutoFact: fj39b01; wu:fj39b01; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 2.0e-18
Internal
ovary_wt_v1.0_unigene9687 Ovary wt v1.0 445
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: LRP1 (Fragment) n=7 Tax=Percomorpha RepID=O73809_TAKRU 0.0
Putative C-terminus
ovary_wt_v1.0_unigene10025 Ovary wt v1.0 591
FL-Next: tr=Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: LDL receptor-related protein 3.41e-06
AutoFact: Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains n=2 Tax=Danio rerio RepID=A2ARH3_DANRE 3.0e-38
Internal
ovary_wt_v1.0_unigene10607 Ovary wt v1.0 286
FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
Sma3: Vitellogenin receptor 6.558e-23
AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 0.0
Internal
ovary_wt_v1.0_unigene11447 Ovary wt v1.0 356
FL-Next: tr=Chromosome 1 SCAF14603, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: low density lipoprotein receptor-like 1.0e-25
Internal
ovary_wt_v1.0_unigene14840 Ovary wt v1.0 317
FL-Next: tr=Chromosome 1 SCAF14603, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: im:7153933; si:dkey-258f14.3 3.0e-22
Internal

Go to Annotations List

Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain