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Assembly Name: Ovary f1 v1.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
ovary_f1_v1.0_unigene612 Ovary f1 v1.0 916
FL-Next: tr=Linker histone H1M; Pagrus major (Red sea bream) (Chrysophrys major). 0.0
Sma3: Linker histone H1M 2.726e-10
AutoFact: Linker histone H1M n=1 Tax=Pagrus major RepID=B7X8Y7_PAGMA 2.0e-30
Putative Complete
ovary_f1_v1.0_unigene1846 Ovary f1 v1.0 333
AutoFact: DUF1777 multi-domain protein 2.0e-07
coding
ovary_f1_v1.0_unigene2348 Ovary f1 v1.0 697
FL-Next: tr=Histone H3-like centromeric protein A; Salmo salar (Atlantic salmon). 0.0
Sma3: Centromere protein A 0.0
AutoFact: Histone H3 n=2 Tax=Salmo salar RepID=B9EMI5_SALSA 0.0
Complete
ovary_f1_v1.0_unigene3277 Ovary f1 v1.0 846
FL-Next: tr=MYST histone acetyltransferase 1; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Myst histone acetyltransferase 2 5.876e-09
AutoFact: Probable histone acetyltransferase MYST1 n=20 Tax=Theria RepID=MYST1_HUMAN 0.0
C-terminus
ovary_f1_v1.0_unigene4991 Ovary f1 v1.0 1085
FL-Next: tr=Chromosome 16 SCAF14974, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: GekBS038P 0.0
AutoFact: Histone H3 n=1 Tax=Harpegnathos saltator RepID=E2BMC4_9HYME 0.0
Complete
ovary_f1_v1.0_unigene6012 Ovary f1 v1.0 696
FL-Next: sp=Histone H2A; Salmo salar (Atlantic salmon). 0.0
Sma3: Histone H2A 0.0
AutoFact: H2A histone family, member V; K11251 histone H2A 0.0
Complete
ovary_f1_v1.0_unigene6026 Ovary f1 v1.0 513
FL-Next: sp=Histone H2A; Salmo salar (Atlantic salmon). 0.0
Sma3: Histone H2A 0.0
AutoFact: Histone H2A (Fragment) n=3 Tax=Tetraodontidae RepID=Q4SPI6_TETNG 0.0
Complete
ovary_f1_v1.0_unigene6085 Ovary f1 v1.0 1008
FL-Next: tr=Chromosome 16 SCAF14974, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: GekBS038P 0.0
AutoFact: Histone H3 n=1 Tax=Harpegnathos saltator RepID=E2BMC4_9HYME 0.0
Complete
ovary_f1_v1.0_unigene6621 Ovary f1 v1.0 961
FL-Next: tr=Linker histone H1M; Pagrus major (Red sea bream) (Chrysophrys major). 0.0
Sma3: Linker histone H1M 1.571e-15
AutoFact: Linker histone H1M n=1 Tax=Pagrus major RepID=B7X8Y7_PAGMA 2.0e-39
Complete
ovary_f1_v1.0_unigene6872 Ovary f1 v1.0 331
FL-Next: sp=Histone H4; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: PREDICTED: histone H4-like n=1 Tax=Pan troglodytes RepID=UPI00020E3732 4.0e-34
Putative Complete
ovary_f1_v1.0_unigene6895 Ovary f1 v1.0 488
FL-Next: sp=Histone H2B; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Histone H2B 0.0
AutoFact: Histone H2B n=1 Tax=Aedes aegypti RepID=Q17ER2_AEDAE 3.0e-40
Complete
ovary_f1_v1.0_unigene7578 Ovary f1 v1.0 824
FL-Next: sp=Histone H2A; Ictalurus punctatus (Channel catfish). 0.0
Sma3: Histone H2A 0.0
AutoFact: PREDICTED: histone H2A.V-like n=1 Tax=Ailuropoda melanoleuca RepID=UPI0001DEBDBB 0.0
Complete
ovary_f1_v1.0_unigene7583 Ovary f1 v1.0 422
FL-Next: sp=Histone H2A; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Histone H2A 0.0
AutoFact: PREDICTED: similar to histone H2A n=1 Tax=Canis lupus familiaris RepID=UPI00005A3496 0.0
Complete
ovary_f1_v1.0_unigene12463 Ovary f1 v1.0 167
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Heterochromatin protein 1, binding protein 3 1.557e-10
AutoFact: similar to heterochromatin protein 1, binding protein 3 2.0e-06
Internal
ovary_f1_v1.0_unigene13131 Ovary f1 v1.0 277
FL-Next: sp=Neurofilament light polypeptide; Coturnix coturnix japonica (Japanese quail) (Coturnix japonica). 0.0
Sma3: Histone H5A 3.332e-12
AutoFact: HC2 multi-domain protein 2.0e-16
Putative C-terminus
ovary_f1_v1.0_unigene16392 Ovary f1 v1.0 517
FL-Next: sp=Histone H2A; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Histone H2A 0.0
AutoFact: Histone H2A n=1 Tax=Danio rerio RepID=E7F7N9_DANRE 0.0
Complete
ovary_f1_v1.0_unigene17592 Ovary f1 v1.0 378
FL-Next: sp=Histone H2A; Salmo salar (Atlantic salmon). 0.0
Sma3: Histone H2A 0.0
AutoFact: Histone H2A.x n=5 Tax=Euteleostomi RepID=H2AX_XENLA 3.0e-22
N-terminus
ovary_f1_v1.0_unigene18142 Ovary f1 v1.0 408
FL-Next: sp=Histone H2B; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Histone H2B 0.0
AutoFact: Histone H2B 1/2 n=40 Tax=Euteleostomi RepID=H2B1_DANRE 2.00386e-43
Complete

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain