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Assembly Name: Ovary f1 v1.0

Name: mRNA splicing, via spliceosome

Term: GO:0000398  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
ovary_f1_v1.0_unigene187 Ovary f1 v1.0 411
FL-Next: tr=Zgc:63611 protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Zgc:63611 protein 9.087e-11
AutoFact: MGC63611; zgc:63611; K12874 intron-binding protein aquarius 8.0e-32
N-terminus
ovary_f1_v1.0_unigene544 Ovary f1 v1.0 493
FL-Next: tr=Ski-interacting protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Zgc:123090 protein 7.595e-06
AutoFact: snw1, MGC123090, fb37b08, skiip, wu:fb37b08, zgc:123090; SNW domain containing 1; K06063 SNW domain-containing protein 1 2.0e-38
C-terminus
ovary_f1_v1.0_unigene3068 Ovary f1 v1.0 484
FL-Next: tr=Chromosome 10 SCAF15019, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: Suppressor with Morphological effect on Genitalia family member (smg-2)-like 2.0e-18
C-terminus
ovary_f1_v1.0_unigene3969 Ovary f1 v1.0 253
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein M 6.161e-09
AutoFact: Heterogeneous nuclear ribonucleoprotein M n=1 Tax=Salmo salar RepID=B5X2U1_SALSA 2.0e-10
C-terminus
ovary_f1_v1.0_unigene7192 Ovary f1 v1.0 166
FL-Next: tr=Myef2 protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Myelin expression factor 2 4.502e-21
AutoFact: Myelin expression factor 2 n=2 Tax=Danio rerio RepID=B0V3S9_DANRE 5.0e-13
C-terminus
ovary_f1_v1.0_unigene7317 Ovary f1 v1.0 112
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein M 3.067e-13
AutoFact: Heterogeneous nuclear ribonucleoprotein M n=1 Tax=Salmo salar RepID=B5X2U1_SALSA 4.0e-13
Internal
ovary_f1_v1.0_unigene7538 Ovary f1 v1.0 726
FL-Next: tr=U2 small nuclear ribonucleoprotein B; Salmo salar (Atlantic salmon). 0.0
Sma3: Chromosome undetermined SCAF7170, whole genome shotgun sequence. 0.0
AutoFact: U2 small nuclear ribonucleoprotein B n=2 Tax=Salmo salar RepID=B9ELD1_SALSA 0.0
Complete
ovary_f1_v1.0_unigene8077 Ovary f1 v1.0 178
FL-Next: tr=Myef2 protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Myelin expression factor 2 3.016e-22
AutoFact: myef2, MGC123351, MGC152722, MGC191306, zgc:123351, zgc:152722; myelin expression factor 2 2.0e-14
Internal
ovary_f1_v1.0_unigene8387 Ovary f1 v1.0 151
unknown
ovary_f1_v1.0_unigene10025 Ovary f1 v1.0 384
FL-Next: tr=CWC15 homolog; Salmo salar (Atlantic salmon). 0.0
Sma3: CWC15 homolog 6.338e-19
AutoFact: CWC15 homolog n=2 Tax=Salmo salar RepID=B9EMU1_SALSA 9.0e-18
Internal
ovary_f1_v1.0_unigene10139 Ovary f1 v1.0 343
FL-Next: tr=Cwc15-like; Ictalurus punctatus (Channel catfish). 0.0
Sma3: CWC15 homolog 5.43e-14
AutoFact: Protein CWC15 homolog n=9 Tax=Clupeocephala RepID=CWC15_DANRE 5.0e-26
C-terminus
ovary_f1_v1.0_unigene14822 Ovary f1 v1.0 226
FL-Next: tr=Chromosome 10 SCAF15019, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Zgc:63611 protein 9.087e-11
AutoFact: MGC63611; zgc:63611; K12874 intron-binding protein aquarius 3.0e-25
Internal
ovary_f1_v1.0_unigene16928 Ovary f1 v1.0 386
FL-Next: tr=U1 small nuclear ribonucleoprotein A; Salmo salar (Atlantic salmon). 0.0
Sma3: U1 small nuclear ribonucleoprotein A 3.859e-14
AutoFact: snrpa, fc19d01, wu:fc19d01, zgc:77810; small nuclear ribonucleoprotein polypeptide A; K11091 U1 small nuclear ribonucleoprotein A 2.0e-38
C-terminus

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain