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Assembly Name: Immune System v1.0

Name: nucleotide-excision repair, DNA damage removal

Term: GO:0000718  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
mmc_v1.0_unigene419 Immune System v1.0 712
• FL-Next: Q66I03 tr=Zgc:92126; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: zgc:92126; K03141 transcription initiation factor TFIIH subunit H1 0.0
• Blast2go: general transcription factor polypeptide 62kda 0.0
C-terminus
mmc_v1.0_unigene2647 Immune System v1.0 427
• FL-Next: C0H989 tr=DNA damage-binding protein 1; Salmo salar (Atlantic salmon). 0.0
• AutoFact: similar to damage-specific DNA binding protein 1, 127kDa; K10610 DNA damage-binding protein 1 0.0
• Blast2go: dna damage-binding protein 1 0.0
Internal
mmc_v1.0_unigene11804 Immune System v1.0 377
• FL-Next: Q6NY87 tr=Excision repair cross-complementing rodent repair deficiency, complementation group 1; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: ercc1, MGC173912, MGC77511, zgc:77511; excision repair cross-complementing rodent repair deficiency, complementation group 1; K10849 DNA excision repair protein ERCC-1 0.0
• Blast2go: excision repair cross-complementing rodent repair deficiency complementation group 1 0.0
Internal
mmc_v1.0_unigene13070 Immune System v1.0 453
• FL-Next: A5WWE3 tr=General transcription factor IIH, polypeptide 3; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: AGAP008522-PA (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7PNH4_ANOGA 0.0
• Blast2go: general transcription factor iih subunit 3 0.0
Internal
mmc_v1.0_unigene15541 Immune System v1.0 224
• FL-Next: C3KIU9 tr=Replication protein A 32 kDa subunit; Anoplopoma fimbria (Sablefish). 0.0
• AutoFact: Replication protein A 32 kDa subunit n=1 Tax=Anoplopoma fimbria RepID=C3KIU9_ANOFI 8.0e-32
• Blast2go: replication protein a 32 kda subunit 1.4616e-31
C-terminus
mmc_v1.0_unigene19656 Immune System v1.0 360
• FL-Next: Q5XJT0 tr=Menage a trois homolog 1; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: mnat1, zgc:101599; menage a trois homolog 1; K10842 CDK-activating kinase assembly factor MAT1 0.0
• Blast2go: cdk-activating kinase assembly factor mat1 0.0
Internal
mmc_v1.0_unigene26149 Immune System v1.0 409
• FL-Next: C3KJ54 tr=Cyclin-H; Anoplopoma fimbria (Sablefish). 0.0
• AutoFact: ccnh, zgc:114132; cyclin H; K06634 cyclin H 0.0
• Blast2go: cyclin h 0.0
Internal
mmc_v1.0_unigene28319 Immune System v1.0 1002
• FL-Next: Q2V6H0 tr=Cdk7; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: Cell division protein kinase 7 n=2 Tax=Cyprinidae RepID=CDK7_CARAU 0.0
• Blast2go: cyclin-dependent kinase 7 0.0
N-terminus
mmc_v1.0_unigene28905 Immune System v1.0 855
• FL-Next: C0H9K5 tr=DNA damage-binding protein 1; Salmo salar (Atlantic salmon). 0.0
• AutoFact: similar to damage-specific DNA binding protein 1, 127kDa; K10610 DNA damage-binding protein 1 0.0
• Blast2go: dna damage-binding protein 1 0.0
C-terminus
mmc_v1.0_unigene29627 Immune System v1.0 243
• AutoFact: ercc1, MGC173912, MGC77511, zgc:77511; excision repair cross-complementing rodent repair deficiency, complementation group 1; K10849 DNA excision repair protein ERCC-1 0.0
• Blast2go: excision repair cross-complementing rodent repair deficiency complementation group 1 0.0
Unknown
mmc_v1.0_unigene30439 Immune System v1.0 251
• AutoFact: Cell division protein kinase 7 n=2 Tax=Cyprinidae RepID=CDK7_CARAU 0.0
• Blast2go: cyclin-dependent kinase 7 0.0
Unknown
mmc_v1.0_unigene30603 Immune System v1.0 425
• FL-Next: Q4RT47 tr=Chromosome 12 SCAF14999, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
• AutoFact: TFIIH basal transcription factor complex p34 subunit n=1 Tax=Osmerus mordax RepID=C1BKD7_OSMMO 5.0e-29
• Blast2go: general transcription factor polypeptide 34kda 7.98815e-30
N-terminus
mmc_v1.0_unigene32718 Immune System v1.0 517
• FL-Next: B5DG24 tr=Cyclin H; Salmo salar (Atlantic salmon). 0.0
• AutoFact: ccnh, zgc:114132; cyclin H; K06634 cyclin H 0.0
• Blast2go: cyclin h 0.0
N-terminus
mmc_v1.0_unigene40527 Immune System v1.0 396
• FL-Next: Q1LVE4 tr=Novel protein (Zgc:113032); Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: xpc, wu:fb12d05, wu:fb12d09, zgc:113032; xeroderma pigmentosum, complementation group C; K10838 xeroderma pigmentosum group C-complementing protein 2.00386e-43
• Blast2go: xeroderma complementation group c 7.42688e-44
Internal
mmc_v1.0_unigene43971 Immune System v1.0 365
• FL-Next: E3TDY7 tr=Cdk-activating kinase assembly factor mat1; Ictalurus punctatus (Channel catfish). 0.0
• AutoFact: Menage a trois homolog 1 n=2 Tax=Danio rerio RepID=Q5XJT0_DANRE 8.00001e-42
• Blast2go: cdk-activating kinase assembly factor mat1 4.72238e-43
N-terminus
mmc_v1.0_unigene48113 Immune System v1.0 285
• FL-Next: B5X3S9 tr=Replication protein A 70 kDa DNA-binding subunit; Salmo salar (Atlantic salmon). 0.0
• AutoFact: Replication protein A 70 kDa DNA-binding subunit n=1 Tax=Salmo salar RepID=B5X3S9_SALSA 3.0e-37
• Blast2go: replication protein a 70 kda dna-binding subunit 5.24239e-37
Internal
mmc_v1.0_unigene52646 Immune System v1.0 186
• FL-Next: C0H9K5 tr=DNA damage-binding protein 1; Salmo salar (Atlantic salmon). 0.0
• AutoFact: DNA damage-binding protein 1 n=23 Tax=Euteleostomi RepID=DDB1_HUMAN 1.0e-29
• Blast2go: dna damage-binding protein 1 2.81255e-29
Internal
mmc_v1.0_unigene53595 Immune System v1.0 70
• FL-Next: Q6NY74 sp=Replication protein A 70 kDa DNA-binding subunit; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• AutoFact: Replication protein A 70 kDa DNA-binding subunit n=1 Tax=Salmo salar RepID=B5X3S9_SALSA 2.0e-19
• Blast2go: replication protein a 70 kda dna-binding subunit 9.28327e-18
mmc_v1.0_unigene53904 Immune System v1.0 151
• FL-Next: E3TDY7 tr=Cdk-activating kinase assembly factor mat1; Ictalurus punctatus (Channel catfish). 0.0
• AutoFact: mnat1, zgc:101599; menage a trois homolog 1; K10842 CDK-activating kinase assembly factor MAT1 3.0e-16
• Blast2go: cdk-activating kinase assembly factor mat1 7.69585e-17
Internal
mmc_v1.0_unigene56021 Immune System v1.0 365
• FL-Next: C1J9L6 tr=DNA repair endonuclease XPF; Liza aurata (Golden grey mullet). 0.0
• AutoFact: DNA repair endonuclease XPF n=2 Tax=Percomorpha RepID=C1J9L5_DICLA 6.00036e-42
• Blast2go: dna repair endonuclease xpf 4.05115e-42
Internal

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain