SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene88031

Length: 447 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene88031
GTCGTGACCTTGGCTGTCACTCAAGCCATAACCCTTAGTTAGGGGGTTTTACTCAACCCATGACTCTATTCTTCTGCTTTATGAATTACATGCCTGATGGAAGCCTAGGGGAGCTGCTGCATGGAAACAATGTTAGTCATCTGGAATGGGATATCAGATACAAAATTGCAGTGGAGGCTGCCAAGGGTTTGTGCTACCTTTGCTACTATGGTCGGCCACTTATCTTTCAACGTTACGTGAAAGTACAACAACATTCATGTGAAATCCAACTTTGAAATCCATGTTGCAGATTTCAAGTTCTTGCATCATTTCGCTGCCTACTAAATGTAAGTTTCAATTGTAGGCCCCTTTGCTACACAGCTCCATGGAAATTGTTGTTTCATCTTTTCTCATTCTATCTCTCTGTTTTCTTGGTTCATATGACTCAAATTCAATATAAGTAACATG

Ace file of the UniGene sp_v1.1_unigene88031 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO	-	-	1.0e-15	67%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	59%
Blast2go	protein kinase-coding resistance protein	-	-	5.63654e-16	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	5.63654e-16	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		5.63654e-16	75%
Blast2go	Metabolic pathways	01100		5.63654e-16	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	5.63654e-16	75%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	5.63654e-16	75%
Blast2go	gametophyte development	GO:0048229	Biological Process	5.63654e-16	75%
Blast2go	starch catabolic process	GO:0005983	Biological Process	5.63654e-16	75%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	5.63654e-16	75%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	5.63654e-16	75%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	5.63654e-16	75%
Blast2go	transferase activity	GO:0016740	Molecular Function	5.63654e-16	75%
Blast2go	cytosol	GO:0005829	Cellular Component	5.63654e-16	75%
Blast2go	nucleus	GO:0005634	Cellular Component	5.63654e-16	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 107 aas, your sequence is shorter than subject: 91 - 998

Fln protein: RDLGCHSSHNP*LGGFTQPMTLFFCFMNYMPDGSLGELLHGNNVSHLEWDIRYKIAVEAAKGLCYLCYYGRPLIFQRYVKVQQHSCEIQL*

Protein Length: 92

Fln nts: GTCGTGACCTTGGCTGTCACTCAAGCCATAACCCTTAGTTAGGGGGTTTTACTCAACCCATGACTCTATTCTTCTGCTTTATGAATTACATGCCTGATGGAAGCCTAGGGGAGCTGCTGCATGGAAACAATGTTAGTCATCTGGAATGGGATATCAGATACAAAATTGCAGTGGAGGCTGCCAAGGGTTTGTGCTACCTTTGCTACTATGGTCGGCCACTTATCTTTCAACGTTACGTGAAAGTACAACAACATTCATGTGAAATCCAACTTTGAAATCCATGTTGCAGATTTCAAGTTCTTGCATCATTTCGCTGCCTACTAAATGTAAGTTTCAATTGTAGGCCCCTTTGCTACACAGCTCCATGGAAATTGTTGTTTCATCTTTTCTCATTCTATCTCTCTGTTTTCTTGGTTCATATGACTCAAATTCAATATAAGTAACATG

Fln Alignment:

sp_v1.1_unigene88031___YMPDGSLGELLHGNNVSHLEWDIRYKIAVEAAKGLCYLCYYGRPLIFQRYVK
Q19AV8_______________YMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain