SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81718

Length: 721 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene81718

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPL; TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor	-	-	7.0e-14	52%
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	tpl protein binding protein homodimerization transcription repressor	-	-	3.30709e-16	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	3.30709e-16	69%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	3.30709e-16	69%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	3.30709e-16	69%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	3.30709e-16	69%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	3.30709e-16	69%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	3.30709e-16	69%
Blast2go	nucleus	GO:0005634	Cellular Component	3.30709e-16	69%
Blast2go	cytosol	GO:0005829	Cellular Component	3.30709e-16	69%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
386	33		66		0.997457
388	66			33	0.997456
389		66	33		0.997458
390	66		33		0.997458
391		66	33		0.997458
443	75	25			0.996477
444	75		25		0.996477
446		25	75		0.996477
451		25	75		0.996477
453			75	25	0.996477
456		66	33		0.997452
457		33		66	0.997452
494		50		50	1.0
512	66			33	0.997452
540	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain