SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81404

Length: 392 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene81404
GCAAGCAAGAGGACCATAGACAGCAGTTGGACACCAGCTGTTCAACCAAGGCTTCTAGATGAGGTTACAGACAAGAGGAAGAACTGGAAATTGAAGATCACTGATTTGGGTCAGTGTAGGTCTCTCAGGTTACCTGACACAATGCATGCAAGCAAGCACTGGATGCCAGTGCTCTCCATAAGCTATGGAAATGACAGCGGAGTGACTGGAATCCATCTATGGAAAGTCTACAGCGAGTATTCCACTGGAGTTGTGGCAGCCAGCTAGTGGGATTGTTATGAATAATTGCATTGGTGATACAAATCCAGAAGAAGCCGCTGCTTGTGTAGCTTTGTCTAAGAATGATTCATCATTCCTATGTGATGTCTACATCCGGTGGCAAGGTCTCCTTA

Ace file of the UniGene sp_v1.1_unigene81404

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	protein	-	-	3.14288e-19	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	3.14288e-19	79%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	3.14288e-19	79%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	3.14288e-19	79%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	3.14288e-19	79%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	3.14288e-19	79%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	3.14288e-19	79%
Blast2go	nucleus	GO:0005634	Cellular Component	3.14288e-19	79%
Blast2go	cytosol	GO:0005829	Cellular Component	3.14288e-19	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94AI7

Fln msg: Separated hits, possible frame ERROR between 156 and 221, Distance to subject end: 269 aas, your sequence is shorter than subject: 131 - 1131

Fln protein: ASKRTIDSSWTPAVQPRLLDEVTDKRKNWKLKITDLGQCRSLRLPDTMHASxxxxxxxxxxxxxxxxxxxxxxxGKSTASIPLELWQPASGIVMNNCIGDTNPEEAAACVALSKNDSSFLCDVYIRWQGLL

Protein Length: 132

Fln nts: GCAAGCAAGAGGACCATAGACAGCAGTTGGACACCAGCTGTTCAACCAAGGCTTCTAGATGAGGTTACAGACAAGAGGAAGAACTGGAAATTGAAGATCACTGATTTGGGTCAGTGTAGGTCTCTCAGGTTACCTGACACAATGCATGCAAGCAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGAAAGTCTACAGCGAGTATTCCACTGGAGTTGTGGCAGCCAGCTAGTGGGATTGTTATGAATAATTGCATTGGTGATACAAATCCAGAAGAAGCCGCTGCTTGTGTAGCTTTGTCTAAGAATGATTCATCATTCCTATGTGATGTCTACATCCGGTGGCAAGGTCTCCTTA

Fln Alignment:

sp_v1.1_unigene81404___VQPRLLDEVTDKRKNWKL-KITDLGQCRSLRLPDTMHASKxxxxxxxxxxxxxxxxxxxxxxGKSTASIPLELWQPASGIVMNNCIGDTNPEEAAACVALSKNDS
Q94AI7_______________VKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKxxxxxxxxxxxxxxxxxxxxxxGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
259	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain