SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78147

Length: 323 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene78147
GCCCTCCTGGCCGTCCTGGAAAGCTGGTTCACGAGGATGATAAGGTGATTGCATTTGAAGACATCAATCCTGCTGCACTGAGGCATTATTTAGTTATTCCTGTGGATCATATACCAACAGTCCGGGACCTTCAGAGAAGAAAAGAAGATTACACTTTAGGTAAGAGCAATTATGTGTGGAAGACATGCTCAAAATTGGGCAATTCTTGTTGCAGAGAGATGCACCTGGAGCTGTTGAATACAGGTTTGGGTTTCATCAACCTCCATTCAATAGCGTATCCCATCTCCATCTTCATTGCTTTGCCCTTCCTTACATACCAAGAT

Ace file of the UniGene sp_v1.1_unigene78147

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histidine triad family protein / HIT family protein	-	-	5.0e-31	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	histidine triad family protein	-	-	0.0	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Sulfur metabolism	00920		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Sulfate adenylyltransferase (ADP).	EC:2.7.7.5	-	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	82%
Blast2go	purine ribonucleotide metabolic process	GO:0009150	Biological Process	82%
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	82%
Blast2go	sulfate adenylyltransferase (ADP) activity	GO:0004780	Molecular Function	82%
Blast2go	peroxisome	GO:0005777	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histidine triad-like motif	IPR011146	-	0.0	82%
Blast2go	Histidine triad motif	IPR011151	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE6

Fln msg: Separated hits, possible frame ERROR between 158 and 176, Distance to subject end: 32 aas, atg_distance in limit (1-15): atg_distance = 10, W2: There is no M at the beginning, your sequence is shorter than subject: 107 - 142

Fln protein: PPGRPGKLVHEDDKVIAFEDINPAALRHYLVIPVDHIPTVRDLQRRKEDYTxxxxxxxVEDMLKIGQFLLQRDAPGAVEYRFGFHQPPFNSVSHLHLHCFALPYIPR

Protein Length: 108

Fln nts: GCCCTCCTGGCCGTCCTGGAAAGCTGGTTCACGAGGATGATAAGGTGATTGCATTTGAAGACATCAATCCTGCTGCACTGAGGCATTATTTAGTTATTCCTGTGGATCATATACCAACAGTCCGGGACCTTCAGAGAAGAAAAGAAGATTACACTTTxxxxxxxxxxxxxxxxxxTGTGGAAGACATGCTCAAAATTGGGCAATTCTTGTTGCAGAGAGATGCACCTGGAGCTGTTGAATACAGGTTTGGGTTTCATCAACCTCCATTCAATAGCGTATCCCATCTCCATCTTCATTGCTTTGCCCTTCCTTACATACCAAGAT

Fln Alignment:

sp_v1.1_unigene78147___PPGRPGKLVHEDDKVIAFEDINPAALRHYLVIPVDHIPTVRDLQRRKEDYTLxxxxxxVEDMLKIGQFLLQRDAPGAVEYRFGFHQPPFNSVSHLHLHCFALPYIPR
D5AAE6_______________PPGRPGKLLHEDDKVVAFEDINPAALRHYLVIPVEHISTVRDLQRRKEDYTLxxxxxxVEDMLKIGQSLLQRDAPGAVEYRFGFHQPPFNSVSHLHLHCFALPYIPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain