SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76540

Length: 451 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene76540
ATGGGGAATGACCGAAAGAATTAATCAATGGTGAAATGAATTAATGAATAAGCTATTGGATCTAGGAAGGGTTTTGAGGCTGAAAGTTTTGGGCTCTCATTTGGGAGTTACATTCAACCAAGCTCATCACATGGCGTCCGAGAAGGAAGCTGCTCTTGCTGCCACACCACCAGAAGATGATAAACCTACAATATTTGACAAAATACTGCAGAAGGAGATTCCCAGTACAGTGGTTTATGAGGATGAGAAGGTACTTGCATTCAGGGATATCGCACCCCAAGCACCTACTCACATCATTATCATCCCCAAAGCAGAAGAGAGGCATGAGGATATTCTAGGTCACCTGCTATGCACTGCAAAAGTTATTGCAAAGCAGGAAGGTTTATCTGATGGCTTTAGAATTGTCATTAACGATGGTCCTACTGGATGCCAATCTGTGTACCATTTACAT

Ace file of the UniGene sp_v1.1_unigene76540

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc-binding protein, putative / protein kinase C inhibitor, putative	-	-	9.99995e-41	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein kinase c inhibitor	-	-	0.0	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	79%
Blast2go	purine ribonucleotide metabolic process	GO:0009150	Biological Process	79%
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	79%
Blast2go	peroxisome	GO:0005777	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Blast2go	Histidine triad (HIT) protein	IPR001310	-	79%
Blast2go	Histidine triad-like motif	IPR011146	-	79%
Blast2go	Histidine triad motif	IPR011151	-	79%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0N3

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 136 - 159

Fln protein: MNKLLDLGRVLRLKVLGSHLGVTFNQAHHMASEKEAALAATPPEDDKPTIFDKILQKEIPSTVVYEDEKVLAFRDIAPQAPTHIIIIPKAEERHEDILGHLLCTAKVIAKQEGLSDGFRIVINDGPTGCQSVYHLH

Protein Length: 137

Fln nts: ATGGGGAATGACCGAAAGAATTAATCAATGGTGAAATGAATTA_-_ATGAATAAGCTATTGGATCTAGGAAGGGTTTTGAGGCTGAAAGTTTTGGGCTCTCATTTGGGAGTTACATTCAACCAAGCTCATCACATGGCGTCCGAGAAGGAAGCTGCTCTTGCTGCCACACCACCAGAAGATGATAAACCTACAATATTTGACAAAATACTGCAGAAGGAGATTCCCAGTACAGTGGTTTATGAGGATGAGAAGGTACTTGCATTCAGGGATATCGCACCCCAAGCACCTACTCACATCATTATCATCCCCAAAGCAGAAGAGAGGCATGAGGATATTCTAGGTCACCTGCTATGCACTGCAAAAGTTATTGCAAAGCAGGAAGGTTTATCTGATGGCTTTAGAATTGTCATTAACGATGGTCCTACTGGATGCCAATCTGTGTACCATTTACAT

Fln Alignment:

sp_v1.1_unigene76540___MNKLLDLGRVLRLKVLGSHLGVTFNQAHHMASEKEAALAATPPEDDKPTIFDKILQKEIPSTVVYEDEKVLAFRDIAPQAPTHIIIIPK----------AEERHEDILGHLLCTAKVIAKQEGLSDGFRIVINDGPTGCQSVYHLH
A9P0N3_______________MNKLLDLGRVLRLKVLGSHLGVTFNQAHHMASEKEAALAATP-DDGKPTIFDKILQKEIPSTVVYEDEKVLAFRDIAPQAPTHIIIIPKVRDGLTGLSQAEERHEDILGHLLYTAKVIAKQEGLSDGFRIVINDGPSGCQSVYHLH

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
86			60	20	0.99255
87		20	20	60	0.992551
88			20	80	0.995493
89		20	20	60	0.992551
90	20		20	60	0.992551
151	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain