SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76357

Length: 382 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene76357
TGAACTCTGACCTTGGCTGTCATTTCTTCGCAGTTTGGGTTTTTATTTTGTGTATCGGGGGCCTGTTCTTGCGACTCTTACAGCCGAGCTATATCTTTTCTGGAACCCTTTTTAAATACACGGGTAGTTAGTGAAGAAGAGTTGGAGTTAGCGATGAAGCCGTTGTATTGTGGAAACATAGAGTATGAGGCTCGCCAGACAGATATTGAACGTTTGTTTGGCAGATATGGAAGAATCGACAGGGTTGACATGAAATCAGGAATATTAAAGAGCGTACAAGCTCTTCCAGGAGATCCTGTGCATATATTCTTTCATCATGCTATGGATCAGCTTCTATAGCCTTGTTCAGCAAAGTTGATATACAAACGACATTTGCATTTTC

Ace file of the UniGene sp_v1.1_unigene76357

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to splicing factor-like protein	-	-	4.0e-09	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	unknown [Picea sitchensis]	-	-	1.24528e-11	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	1.24528e-11	96%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	1.24528e-11	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM66

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 195 aas, your sequence is shorter than subject: 62 - 271

Fln protein: MKPLYCGNIEYEARQTDIERLFGRYGRIDRVDMKSGILKSVQALPGDPVHIFFHHAMDQLL*

Protein Length: 63

Fln nts: TGAACTCTGACCTTGGCTGTCATTTCTTCGCAGTTTGGGTTTTTATTTTGTGTATCGGGGGCCTGTTCTTGCGACTCTTACAGCCGAGCTATATCTTTTCTGGAACCCTTTTTAAATACACGGGTAGTTAGTGAAGAAGAGTTGGAGTTAGCG_-_ATGAAGCCGTTGTATTGTGGAAACATAGAGTATGAGGCTCGCCAGACAGATATTGAACGTTTGTTTGGCAGATATGGAAGAATCGACAGGGTTGACATGAAATCAGGAATATTAAAGAGCGTACAAGCTCTTCCAGGAGATCCTGTGCATATATTCTTTCATCATGCTATGGATCAGCTTCTATAGCCTTGTTCAGCAAAGTTGATATACAAACGACATTTGCATTTTC

Fln Alignment:

sp_v1.1_unigene76357___MKPLYCGNIEYEARQTDIERLFGRYGRIDRVDMKSG
A9NM66_______________MKPLYCGNLEYEARQSEIERLFGRYGRVERVDMKSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain