SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene76171

Length: 736 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene76171

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WRKY transcription factor 1 (Fragment) n=2 Tax=Pinaceae RepID=B2KZJ7_PICAB	-	-	2.00386e-43	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	wrky transcription	-	-	3.32108e-43	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	3.32108e-43	53%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	3.32108e-43	53%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	3.32108e-43	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA-binding WRKY	IPR003657	-	3.32108e-43	53%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
333		25	75		0.996473
335	75			25	0.996473
339		25	75		0.996473
340		25	75		0.996473
341	75			25	0.996473
345		25	75		0.996473
346	75			25	0.996473
347	75		25		0.996473
348		25	50	25	0.99554
349	75	25			0.996473
352	75			25	0.996473
354	25	75			0.996473
379		33		66	0.997452
422		20		80	0.995493
423			20	80	0.995493
427	80			20	0.995493
430	80	20			0.995493
433	80			20	0.995493
436	80	20			0.995493
441		20		80	0.995493
443	80	20			0.995493
446	20	80			0.995493
450		60	40		1.0
468	20		80		0.995493
620		75		25	0.996474

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain