SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75671

Length: 337 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75671
CGTCGTGACCTTGGCTGTCACTCAGATGCTCTGCGTTGGGTGTCTGTCAGTGATGATGAGGTTGATGTGGATGAGCTTGAGAAACGGATGTGGAAGGATCGGGTCAGGCTTCGGCGCTTGAAGGAGCAGCGGAAAGGAAGTGATGTCGTTGATGATGCAAAGCAGAGGCAATCTCAAGAGCAAGCGAGAAGAAAGAAGATGTCAAGGGCACAGGATGGTATTTTGAAGTACATGTTAAAGATGATGGAGGTTTGTAAGGCTCAGGGTTTTGTATATGGTATAATTCCAGAGAAAGGGAAGCCGGTGAGCGGCGCCTCTGATAATCTCAGGGCCTGGT

Ace file of the UniGene sp_v1.1_unigene75671

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-insensitive 3d n=2 Tax=Populus trichocarpa RepID=B9HK87_POPTR	-	-	5.0e-38	88%
FL-Next	sp=Protein ETHYLENE INSENSITIVE 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%
Blast2go	ethylene insensitive 3 class transcription factor	-	-	4.49624e-38	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	4.49624e-38	93%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	4.49624e-38	93%
Blast2go	protein binding	GO:0005515	Molecular Function	4.49624e-38	93%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	4.49624e-38	93%
Blast2go	nucleus	GO:0005634	Cellular Component	4.49624e-38	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ethylene insensitive 3	IPR006957	-	4.49624e-38	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O24606

Fln msg: Distance to subject end: 491 aas, your sequence is shorter than subject: 112 - 628

Fln protein: RRDLGCHSDALRWVSVSDDEVDVDELEKRMWKDRVRLRRLKEQRKGSDVVDDAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAW

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGCTCTGCGTTGGGTGTCTGTCAGTGATGATGAGGTTGATGTGGATGAGCTTGAGAAACGGATGTGGAAGGATCGGGTCAGGCTTCGGCGCTTGAAGGAGCAGCGGAAAGGAAGTGATGTCGTTGATGATGCAAAGCAGAGGCAATCTCAAGAGCAAGCGAGAAGAAAGAAGATGTCAAGGGCACAGGATGGTATTTTGAAGTACATGTTAAAGATGATGGAGGTTTGTAAGGCTCAGGGTTTTGTATATGGTATAATTCCAGAGAAAGGGAAGCCGGTGAGCGGCGCCTCTGATAATCTCAGGGCCTGGT

Fln Alignment:

sp_v1.1_unigene75671___LEKRMWKDRVRLRRLKEQRKGSDVVDDAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAW
O24606_______________LERRMWRDKMRLKRLKEQDKGKEGVDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPENGKPVTGASDNLREW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain