SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75608

Length: 346 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75608
CGTCGTGACCTTGGCTGTCACTCAAATTGATCAACACATGATCTGGCTTATTGGATTAAAGAATATATTTGCTAGGCAACTTCCAAACATGCCAAAAGAGTATATTGTTAGACTTGTAATGGACAGGAGCCACAAGTCAGTGATGATCATCAAGCAAAATCAAGTTGTTGGGGGCATCACTTATCGCCCTTATCTTAGTCAGAAATTTGGAGAAATAGCTTTCTGTGCTATTACAGCGGATGAACAAGTAAAAGGCTATGGGACAAGGCTGATGAATCATTTGAAACAACATGCCCGTGATGTGGATGGGCTAACACACTTTCTAACATATGCTGACAATAATGCA

Ace file of the UniGene sp_v1.1_unigene75608

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone acetyltransferase n=1 Tax=Populus trichocarpa RepID=B9H8G2_POPTR	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	histone acetyltransferase	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	95%
Blast2go	regulation of glucosinolate biosynthetic process	GO:0010439	Biological Process	95%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	95%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	95%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	95%
Blast2go	root morphogenesis	GO:0010015	Biological Process	95%
Blast2go	response to light stimulus	GO:0009416	Biological Process	95%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	95%
Blast2go	histone acetylation	GO:0016573	Biological Process	95%
Blast2go	H3 histone acetyltransferase activity	GO:0010484	Molecular Function	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	DNA binding	GO:0003677	Molecular Function	95%
Blast2go	histone acetyltransferase complex	GO:0000123	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GNAT domain	IPR000182	-	0.0	95%
Blast2go	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 115 - 630

Fln protein: VVTLAVTQIDQHMIWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMIIKQNQVVGGITYRPYLSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNA

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTGATCAACACATGATCTGGCTTATTGGATTAAAGAATATATTTGCTAGGCAACTTCCAAACATGCCAAAAGAGTATATTGTTAGACTTGTAATGGACAGGAGCCACAAGTCAGTGATGATCATCAAGCAAAATCAAGTTGTTGGGGGCATCACTTATCGCCCTTATCTTAGTCAGAAATTTGGAGAAATAGCTTTCTGTGCTATTACAGCGGATGAACAAGTAAAAGGCTATGGGACAAGGCTGATGAATCATTTGAAACAACATGCCCGTGATGTGGATGGGCTAACACACTTTCTAACATATGCTGACAATAATGCA

Fln Alignment:

sp_v1.1_unigene75608___IDQHMIWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMIIKQNQVVGGITYRPYLSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNA
B8LPU6_______________IDQHMIWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSMMIIKQNQVVGGISYRPYLSQRFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNHA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain