SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74708

Length: 306 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74708
CGTCGTGACCTTGGCTGTCACTCATTTGTCTTAATTTCTAACATGTTTTATGTCTCAGCATTGGGCTGAAAGAAAGAGAGGGTGGTGATTTTGGCTGTTATTGATTTCAGTGGAGGCATTTTGGAGCTAGGTATACAAACATGAATGCAGATTACAGTGGACAAGGTTTTGATCAACTAGCAGATGTAATTCATAAGATTAAGTTTAATCCAGAAGATCGTCGCATTATACTCTCAGCATGGAACCCAGCGGACCTTAAGCTCATGGCTCTTCCTCCATGCCACATGTTTGCTCAGTTTTATGTTG

Ace file of the UniGene sp_v1.1_unigene74708

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Ricinus communis RepID=B9RH79_RICCO	-	-	4.0e-34	82%
FL-Next	sp=Bifunctional dihydrofolate reductase-thymidylate synthase; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	81%
Blast2go	dihydrofolate reductase-thymidylate synthase	-	-	6.72942e-34	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular nitrogen compound biosynthetic process	GO:0044271	Biological Process	6.72942e-34	87%
Blast2go	small molecule metabolic process	GO:0044281	Biological Process	6.72942e-34	87%
Blast2go	transferase activity	GO:0016740	Molecular Function	6.72942e-34	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thymidylate synthase	IPR000398	-	6.72942e-34	87%
Blast2go	Thymidylate synthase, active site	IPR020940	-	6.72942e-34	87%
Blast2go	Thymidylate synthase/dCMP hydroxymethylase domain	IPR023451	-	6.72942e-34	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P51820

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 110 aas, your sequence is shorter than subject: 101 - 530

Fln protein: S*PWLSLICLNF*HVLCLSIGLKEREGGDFGCY*FQWRHFGARYTNMNADYSGQGFDQLADVIHKIKFNPEDRRIILSAWNPADLKLMALPPCHMFAQFYV

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTCTTAATTTCTAACATGTTTTATGTCTCAGCATTGGGCTGAAAGAAAGAGAGGGTGGTGATTTTGGCTGTTATTGATTTCAGTGGAGGCATTTTGGAGCTAGGTATACAAACATGAATGCAGATTACAGTGGACAAGGTTTTGATCAACTAGCAGATGTAATTCATAAGATTAAGTTTAATCCAGAAGATCGTCGCATTATACTCTCAGCATGGAACCCAGCGGACCTTAAGCTCATGGCTCTTCCTCCATGCCACATGTTTGCTCAGTTTTATGTTG

Fln Alignment:

sp_v1.1_unigene74708___IGLKEREGGDFG-CY*FQWRHFGARYTNMNADYSGQGFDQLADVIHKIKFNPEDRRIILSAWNPADLKLMALPPCHMFAQFYV
P51820_______________VGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKRNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain