SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene72803

Length: 259 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene72803
GACACCTGTTTCCAGGTCCTCTCGCGCTGGCTTGCAGTTTCCCGTGGGGAGAACCCATCAGGAGATGAAGTCTGGCTTGCATCCAAGTATCAGAGTGGGGGCGTCTGAGCTTGGCTGTCATCTGTTTTGGAGGATCTGACCGTGGCGGGGAATGCTAGCAAAGATCTGAAGGCGAAACGCATTACACTCAGGCATCTGCTGCTTGCCATTAGGGGTGATGAGGATCTGGACACGCTGATTAAGGGCACAATTGCAGGTG

Ace file of the UniGene sp_v1.1_unigene72803

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A (Fragment) n=3 Tax=rosids RepID=D7T3I0_VITVI	-	-	2.0e-19	72%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	histone z	-	-	1.97886e-19	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.97886e-19	85%
Blast2go	flower development	GO:0009908	Biological Process	1.97886e-19	85%
Blast2go	protein binding	GO:0005515	Molecular Function	1.97886e-19	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMZ1

Fln msg: Separated hits, possible frame ERROR between 106 and 130, Distance to subject end: 18 aas, your sequence is shorter than subject: 86 - 145

Fln protein: TPVSRSSRAGLQFPVGRTHQEMKSGLHPSIRVGAxxxxxxxxxEDLTVAGNASKDLKAKRITLRHLLLAIRGDEDLDTLIKGTIAG

Protein Length: 87

Fln nts: GACACCTGTTTCCAGGTCCTCTCGCGCTGGCTTGCAGTTTCCCGTGGGGAGAACCCATCAGGAGATGAAGTCTGGCTTGCATCCAAGTATCAGAGTGGGGGCGTCxxxxxxxxxxxxxxxxxxxxxxxxGGAGGATCTGACCGTGGCGGGGAATGCTAGCAAAGATCTGAAGGCGAAACGCATTACACTCAGGCATCTGCTGCTTGCCATTAGGGGTGATGAGGATCTGGACACGCTGATTAAGGGCACAATTGCAGGTG

Fln Alignment:

sp_v1.1_unigene72803___PVSRSSRAGLQFPVGRTHQEMKSGLHPSIRVGASxxxxxxxxEDLTVAGNASKDLKAKRITLRHLLLAIRGDEDLDTLIKGTIAG
A9NMZ1_______________PVSRSSRAGLQFPVGRIHRLLKSRISANGRVGATxxxxxxxxEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain