SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene71021

Length: 335 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene71021
CGTCGTGACCTTGGCTGTCACTCATGGGTGTACAAAAGAACCATGTGATAGCTACTTCAACTTCTTATTCACTTCAAGATCTTCAAGATACTACTTTGGGGTCTCTTCTATCTTCTCTAATGCAACATTGTGACCCCCCACAAAGAAGGTTTCCCTTAGAGAAGGGAATTCCTCCGCCTTGGTGGCCTTCAGGGGATGAAGATTGGTGGCCGCAATTGGGCTTGCAGAAAGGTCAAGGTCCTCTCCCTTACAAAAAGCCCCATGATTTGAAAAAGGTTTGGAAAGTTGGGGTTCTTACTTCTGCGATTAAGCACATGTCTCCCGATGTTGCAAAG

Ace file of the UniGene sp_v1.1_unigene71021

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EIN3a transcription factor (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9SK60_PHYPA	-	-	1.4013e-45	76%
FL-Next	sp=Protein ETHYLENE INSENSITIVE 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Blast2go	ein3-like protein	-	-	2.8026e-45	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	2.8026e-45	89%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	2.8026e-45	89%
Blast2go	protein binding	GO:0005515	Molecular Function	2.8026e-45	89%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	2.8026e-45	89%
Blast2go	nucleus	GO:0005634	Cellular Component	2.8026e-45	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ethylene insensitive 3	IPR006957	-	2.8026e-45	89%
Blast2go	Ethylene insensitive 3-like protein, DNA-binding domain	IPR023278	-	2.8026e-45	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O24606

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 363 aas, your sequence is shorter than subject: 111 - 628

Fln protein: S*PWLSLMGVQKNHVIATSTSYSLQDLQDTTLGSLLSSLMQHCDPPQRRFPLEKGIPPPWWPSGDEDWWPQLGLQKGQGPLPYKKPHDLKKVWKVGVLTSAIKHMSPDVAK

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGTGTACAAAAGAACCATGTGATAGCTACTTCAACTTCTTATTCACTTCAAGATCTTCAAGATACTACTTTGGGGTCTCTTCTATCTTCTCTAATGCAACATTGTGACCCCCCACAAAGAAGGTTTCCCTTAGAGAAGGGAATTCCTCCGCCTTGGTGGCCTTCAGGGGATGAAGATTGGTGGCCGCAATTGGGCTTGCAGAAAGGTCAAGGTCCTCTCCCTTACAAAAAGCCCCATGATTTGAAAAAGGTTTGGAAAGTTGGGGTTCTTACTTCTGCGATTAAGCACATGTCTCCCGATGTTGCAAAG

Fln Alignment:

sp_v1.1_unigene71021___SLMGVQKNHVIATSTSYSLQDLQDTTLGSLLSSLMQHCDPPQRRFPLEKGIPPPWWPSGDEDWWPQLGLQKGQGPLPYKKPHDLKKVWKVGVLTSAIKHMSPDVAK
O24606_______________NIPGIHEGNNPIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNGKEDWWPQLGLPKDQGPAPYKKPHDLKKAWKVGVLTAVIKHMFPDIAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain