SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67831

Length: 305 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene67831
CGTCGTGACCTTGGCTGTCACTCAATCTTCACAGAGATCACACACGCCTTGAAATCTTCTTGGTGGATTTTGTGGCACGGATGTGATGAGGGTTTTGATGCCAATTCTCTCTGTGGTTGGTGCAGAGAAAGCGAAGATGGGTGAGAAGGAATGGTACTTTTTCAGCCTCAGAGATCGCAAATATCCAACAGGGCTGCGCACCAACAGAGCCACAGAAGCGGGCTACTGGAAGGCCACTGGCAAGGACCGAGAGATTTTCAGTGCACGAGGTTCTTCCCTCGTTGGGATGAAGAAAACCCTAGTGT

Ace file of the UniGene sp_v1.1_unigene67831

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NO APICAL MERISTEM n=1 Tax=Aquilegia coerulea RepID=B8XRZ8_AQUCA	-	-	3.0e-26	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	no apical meristem	-	-	5.18516e-26	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	secondary shoot formation	GO:0010223	Biological Process	5.18516e-26	94%
Blast2go	formation of organ boundary	GO:0010160	Biological Process	5.18516e-26	94%
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	5.18516e-26	94%
Blast2go	regulation of timing of organ formation	GO:0048504	Biological Process	5.18516e-26	94%
Blast2go	leaf development	GO:0048366	Biological Process	5.18516e-26	94%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	5.18516e-26	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	5.18516e-26	94%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU17

Fln msg: Distance to subject end: 34 aas, atg_distance in limit (1-15): atg_distance = 16, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 73 - 148

Fln protein: MRVLMPILSVVGAEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSARGSSLVGMKKTLV

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCACAGAGATCACACACGCCTTGAAATCTTCTTGGTGGATTTTGTGGCACGGATGTG_-_ATGAGGGTTTTGATGCCAATTCTCTCTGTGGTTGGTGCAGAGAAAGCGAAGATGGGTGAGAAGGAATGGTACTTTTTCAGCCTCAGAGATCGCAAATATCCAACAGGGCTGCGCACCAACAGAGCCACAGAAGCGGGCTACTGGAAGGCCACTGGCAAGGACCGAGAGATTTTCAGTGCACGAGGTTCTTCCCTCGTTGGGATGAAGAAAACCCTAGTGT

Fln Alignment:

sp_v1.1_unigene67831___EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSARGSSLVGMKKTLV
A9NU17_______________DMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKVYSL--ASTIGIKKTLV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
43	66			33	0.997458
45	66		33		0.997458
46		66		33	0.997458
66			66	33	0.997452
68			66	33	0.997452
69			66	33	0.997452
70	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain