SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67222

Length: 431 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene67222
CGTCGTGACCTTGGCTGTCACTCAATTTTCTCCCTTGATTTTTTCCCGAAATATGGCAATTTCAAGGTTTTCAACAAACTGCTATGTTCTCTCAGCCCTTTCTTCTTTTCCTGCGGCTCGAGCGTGAGGTTCGAGTTTTTCTCAGCCTTGGAAGTATCTCTTTTGGTCTTAGGTGATGGAATTGTAACCTTCCCGAACAACGGCCGTAGAGGTCTGGAGATTCGCATGTAACAAGATAAAATGGCGCAATCCGGGGAACAGCCTAATGAAGCCACGGTTCCTCGCCCTGCTGATTCTCATAGATCTATACCAACGCCGTTTCTCATGAAAACCTACCGGCTTGTCGACGATCCGAGCTTGAACGACATTATTTCATGGAACGAAGACGGCACTACGTTCATCGTTTGGCGGCCTGCGGAATTCGCCCGTGA

Ace file of the UniGene sp_v1.1_unigene67222

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock factor protein, putative n=1 Tax=Ricinus communis RepID=B9RC59_RICCO	-	-	2.0e-16	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	heat shock factor	-	-	3.73891e-16	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	3.73891e-16	84%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	3.73891e-16	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	3.73891e-16	84%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX6

Fln msg: Distance to subject end: 385 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 63 - 489

Fln protein: MAQSGEQPNEATVPRPADSHRSIPTPFLMKTYRLVDDPSLNDIISWNEDGTTFIVWRPAEFAR

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCTCCCTTGATTTTTTCCCGAAATATGGCAATTTCAAGGTTTTCAACAAACTGCTATGTTCTCTCAGCCCTTTCTTCTTTTCCTGCGGCTCGAGCGTGAGGTTCGAGTTTTTCTCAGCCTTGGAAGTATCTCTTTTGGTCTTAGGTGATGGAATTGTAACCTTCCCGAACAACGGCCGTAGAGGTCTGGAGATTCGCATGTAACAAGATAAA_-_ATGGCGCAATCCGGGGAACAGCCTAATGAAGCCACGGTTCCTCGCCCTGCTGATTCTCATAGATCTATACCAACGCCGTTTCTCATGAAAACCTACCGGCTTGTCGACGATCCGAGCTTGAACGACATTATTTCATGGAACGAAGACGGCACTACGTTCATCGTTTGGCGGCCTGCGGAATTCGCCCGTGA

Fln Alignment:

sp_v1.1_unigene67222___PRPADS-HRSIPTPFLMKTYRLVDDPSLNDIISWNEDGTTFIVWRPAEFA
A9NUX6_______________PRPMEGLHCAGPPPFLTKTYDMVEDPLTDTVVSWSSTNNSFVVWNSHLFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain