SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63085

Length: 292 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63085
ATATAAAGCGCTTCGCTGGCACCCTCAGAACAGCCCAACACCCCAACATTCTACACACACCAACATGTCTGTCATTCCCATCCATAACAGTGCAGAGCTCTCCGAACACACTAGCGATTCCAGTACCCTCATTGTTATCGATTTTACTGCTTCTTGGTGCCCACCATGCCAAATGATTAAGCCCATTTTCGAGGCGCTCGCGAAGCAGTACACCAATGTGAAATTCCTCAAGGTTGATGTCGACGAAGCGAGCGACGTTGCCCAAGCCTTCGGCATCAAGGCTATGCCGACT

Ace file of the UniGene sp_v1.1_unigene63085

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin domain 2; Thioredoxin fold n=2 Tax=Medicago truncatula RepID=A2Q2R1_MEDTR	-	-	3.0e-17	48%
FL-Next	sp=Thioredoxin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	thioredoxin h-type	-	-	2.00323e-17	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	2.00323e-17	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	2.00323e-17	69%
Blast2go	defense response to fungus	GO:0050832	Biological Process	2.00323e-17	69%
Blast2go	response to microbial phytotoxin	GO:0010188	Biological Process	2.00323e-17	69%
Blast2go	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	2.00323e-17	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.00323e-17	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thioredoxin	IPR005746	-	2.00323e-17	69%
Blast2go	Thioredoxin fold	IPR012335	-	2.00323e-17	69%
Blast2go	Thioredoxin-like fold	IPR012336	-	2.00323e-17	69%
Blast2go	Thioredoxin domain	IPR013766	-	2.00323e-17	69%
Blast2go	Thioredoxin-like	IPR017936	-	2.00323e-17	69%
Blast2go	Thioredoxin, conserved site	IPR017937	-	2.00323e-17	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWD4

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 76 - 123

Fln protein: MSVIPIHNSAELSEHTSDSSTLIVIDFTASWCPPCQMIKPIFEALAKQYTNVKFLKVDVDEASDVAQAFGIKAMPT

Protein Length: 77

Fln nts: ATATAAAGCGCTTCGCTGGCACCCTCAGAACAGCCCAACACCCCAACATTCTACACACACCAAC_-_ATGTCTGTCATTCCCATCCATAACAGTGCAGAGCTCTCCGAACACACTAGCGATTCCAGTACCCTCATTGTTATCGATTTTACTGCTTCTTGGTGCCCACCATGCCAAATGATTAAGCCCATTTTCGAGGCGCTCGCGAAGCAGTACACCAATGTGAAATTCCTCAAGGTTGATGTCGACGAAGCGAGCGACGTTGCCCAAGCCTTCGGCATCAAGGCTATGCCGACT

Fln Alignment:

sp_v1.1_unigene63085___DSSTLIVIDFTASWCPPCQMIKPIFEALAKQYTNVKFLKVDVDEASDVAQAFGIKAMPT
A9NWD4_______________DTRRLVVVDFTATWCGPCRVISPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain