SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60621

Length: 611 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60621

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Geranylgeranyl transferase type I beta subunit, putative n=1 Tax=Ricinus communis RepID=B9T226_RICCO	-	-	3.0e-17	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	geranylgeranyl transferase type i beta	-	-	5.96091e-17	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein geranylgeranyltransferase type I.	EC:2.5.1.59	-	5.96091e-17	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	5.96091e-17	72%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	5.96091e-17	72%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	5.96091e-17	72%
Blast2go		GO:0018348	Biological Process	5.96091e-17	72%
Blast2go	CAAX-protein geranylgeranyltransferase activity	GO:0004662	Molecular Function	5.96091e-17	72%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	5.96091e-17	72%
Blast2go	CAAX-protein geranylgeranyltransferase complex	GO:0005953	Cellular Component	5.96091e-17	72%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
277		37	62		1.0
278	62	37			1.0
279	62			37	1.0
283	62	37			1.0
286			62	37	1.0
362		10		90	0.90298
364		88		11	0.923564
366	88		11		0.923564
367	88			11	0.923564
370		11	88		0.923564
372			88	11	0.923564
373	88			11	0.923564
376	88	11			0.923565
377			88	11	0.923576
380		11	88		0.923564
381	11			88	0.923564
382		11		88	0.923564
384		11	88		0.923564
529	83		16		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain