SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60504

Length: 718 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60504

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme 1, E2 n=1 Tax=Selaginella moellendorffii RepID=D8SK34_SELML	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ubiquitin carrier protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	78%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	78%
Blast2go	histone H2B ubiquitination	GO:0033523	Biological Process	78%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	78%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	78%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	78%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
21		66		33	1.0
22			33	66	1.0
23		40	40	20	1.0
24	50		50		1.0
26		20		80	0.995493
32	87		12		0.992556
35		12	87		0.992555
256			87	12	0.992556
260			87	12	0.992555
293		11	88		0.923695
296		11		88	0.923646
301	11			88	0.923646
302		11	88		0.923646
304	87			12	0.992554
305	87			12	0.992554
307			12	87	0.992554
309		87	12		0.992554
610	66			33	0.997464
611			66	33	0.997459
612	66			33	0.997476
614		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain