SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46539

Length: 468 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46539
GGGGTTTCGCAGAGGAGGAGTTCTGGTCATCCTGCCTCAAGCTCATCACCATCGCCATTTTCCTCATTGCATCGCTAGTCTTCGTTCTCGGCGGTGGTCCCAAATCCGGTGACTATGGTTCTTATTGGGGTGCCAGGCTCTGGCATGATCCTGGCGCTCTCGCAAATGGCTTCCCTGGTGTCTGCGCCGTCTTCGTTACGGCTGCCTTCTCCTTCGCCGGAACAGAATTGGTCGGTCTCGCTGCCACCGAGCACCCTAACCCAATCAAGGCTTTACCAAGCGCGATCAAGATGACCTTCTGGCGCATCACCTTCGTCTTCGTATTGTCTTTGATGATGGTCGGTTTCCTGGTTCCATACAACGATGAGCGATTGATTGGAGGCTCATACGATGCCAACACAAGTCCCTTCGTTCTTGTCTTCCGCAACGCCAACGTCAGCGGTCTTCCCGACTTCATCAACGCGGTCA

Ace file of the UniGene sp_v1.1_unigene46539

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino-acid permease inda1 n=2 Tax=Ajellomyces dermatitidis RepID=C5GC54_AJEDR	-	-	60%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	32%
Blast2go	amino-acid permease inda1	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular nitrogen compound biosynthetic process	GO:0044271	Biological Process	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid/polyamine transporter I	IPR002293	-	0.0	73%
Blast2go	Amino acid permease domain	IPR004841	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9U7D8

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 155 - 338

Fln protein: GFAEEEFWSSCLKLITIAIFLIASLVFVLGGGPKSGDYGSYWGARLWHDPGALANGFPGVCAVFVTAAFSFAGTELVGLAATEHPNPIKALPSAIKMTFWRITFVFVLSLMMVGFLVPYNDERLIGGSYDANTSPFVLVFRNANVSGLPDFINAV

Protein Length: 156

Fln nts: GGGGTTTCGCAGAGGAGGAGTTCTGGTCATCCTGCCTCAAGCTCATCACCATCGCCATTTTCCTCATTGCATCGCTAGTCTTCGTTCTCGGCGGTGGTCCCAAATCCGGTGACTATGGTTCTTATTGGGGTGCCAGGCTCTGGCATGATCCTGGCGCTCTCGCAAATGGCTTCCCTGGTGTCTGCGCCGTCTTCGTTACGGCTGCCTTCTCCTTCGCCGGAACAGAATTGGTCGGTCTCGCTGCCACCGAGCACCCTAACCCAATCAAGGCTTTACCAAGCGCGATCAAGATGACCTTCTGGCGCATCACCTTCGTCTTCGTATTGTCTTTGATGATGGTCGGTTTCCTGGTTCCATACAACGATGAGCGATTGATTGGAGGCTCATACGATGCCAACACAAGTCCCTTCGTTCTTGTCTTCCGCAACGCCAACGTCAGCGGTCTTCCCGACTTCATCAACGCGGTCA

Fln Alignment:

sp_v1.1_unigene46539___FAEEEFWSSCLKLITIAIFLIASLVFVLGGGPKSG--DYGSYWGARLWHD---PGALANGFPGVCAVFVTAAFSFAGTELVGLAATEHPNPIKALPSAIKMTFWRITFVFVLSLMMVGFLVPYNDERLIGGSYDANTSPFVLVFRNANVSGLPDFINAV
A9U7D8_______________FGESEFWFSSIKVSAIILFII------LGGAAMFGLIDLKNGQPAPMFSNFATSSLLPHGITGLLMTMITVNFSFQGTELIGIAAGESKEPEKTIPKSIRNTVWRTLVFFVLAIFILAGMIPYEQAGVV-------ESPFVVVFDSIGIPFAADIMNFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain