SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38727

Length: 704 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene38727 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2940 Proteins containing SET domain	-	-	2.0e-24	51%
FL-Next	Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1	-	-	0.0	60%
Blast2go	set domain protein	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	71%
Blast2go	regulation of flower development	GO:0009909	Biological Process	71%
Blast2go	histone H3-K4 methylation	GO:0051568	Biological Process	71%
Blast2go	specification of floral organ identity	GO:0010093	Biological Process	71%
Blast2go	phosphatidylinositol-5-phosphate binding	GO:0010314	Molecular Function	71%
Blast2go	histone methyltransferase activity (H3-K4 specific)	GO:0042800	Molecular Function	71%
Blast2go	cytoplasm	GO:0005737	Cellular Component	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SET domain	IPR001214	-	0.0	71%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
423	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain