SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38637

Length: 456 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene38637
AATTTACCGCCATATAACATCAGATCAATTCTCTCCAGAAGCCCTCTTGTCTTCAGTGGATTTATCATCAGAACAAAACATTCTGGATTTAAAGAATCGAGTAGAAGCCTCCATAGTTATATGGAAACGGAAGATGAGCAATAAGGAAAACAAACCATCCATATCCTCTTGGGGATCCACAGTCACTCATGAGAGACGGGAAGTCCTTGGAGAAAGGGCTGAGACTCTTCTCCTGTTACTCAAGCAGAGATATCCTGGCATTCCACAGACAATACTGGATATGAACAAAATTCAGTATAACAAGGATGTTGGTCAGTCGATACTGGAGAGCTACTCTCGAGTGCTGGAGAGCCTTTCTTTCAACATTCTATCCCGAATAGATGATGTTTTGTATGCAGACAACCAGGCCAGAGGTCCTGCGTTTCCTGATCCCTCCTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene38637 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ROPGEF9; Rho guanyl-nucleotide exchange factor	-	-	1.99993e-41	61%
FL-Next	sp=Rho guanine nucleotide exchange factor 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	protein	-	-	7.14662e-44	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	7.14662e-44	82%
Blast2go	pollen tube growth	GO:0009860	Biological Process	7.14662e-44	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.14662e-44	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant specific Rop nucleotide exchanger, PRONE	IPR005512	-	7.14662e-44	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LV40

Fln msg: Distance to subject end: 74 aas, your sequence is shorter than subject: 151 - 523

Fln protein: IYRHITSDQFSPEALLSSVDLSSEQNILDLKNRVEASIVIWKRKMSNKENKPSISSWGSTVTHERREVLGERAETLLLLLKQRYPGIPQTILDMNKIQYNKDVGQSILESYSRVLESLSFNILSRIDDVLYADNQARGPAFPDPSFAVSDR

Protein Length: 152

Fln nts: AATTTACCGCCATATAACATCAGATCAATTCTCTCCAGAAGCCCTCTTGTCTTCAGTGGATTTATCATCAGAACAAAACATTCTGGATTTAAAGAATCGAGTAGAAGCCTCCATAGTTATATGGAAACGGAAGATGAGCAATAAGGAAAACAAACCATCCATATCCTCTTGGGGATCCACAGTCACTCATGAGAGACGGGAAGTCCTTGGAGAAAGGGCTGAGACTCTTCTCCTGTTACTCAAGCAGAGATATCCTGGCATTCCACAGACAATACTGGATATGAACAAAATTCAGTATAACAAGGATGTTGGTCAGTCGATACTGGAGAGCTACTCTCGAGTGCTGGAGAGCCTTTCTTTCAACATTCTATCCCGAATAGATGATGTTTTGTATGCAGACAACCAGGCCAGAGGTCCTGCGTTTCCTGATCCCTCCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene38637___IYRHITSDQFSPEALLSSVDLSSEQNILDLKNRVEASIVIWKRKMSNKENKPSISSWGSTVTHERREVLGERAETXXXXLKQRYPGIPQTILDMNKIQYNKDVGQSILESYSRVLESLSFNILSRIDDVLYADNQA
Q9LV40_______________IYKSITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTK---SSWGSAVSLEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
276	20			80	0.995493
281		20	80		0.995493
282		20	80		0.995493
285	20			80	0.995493
286		80	20		0.995493
287		80	20		0.995493
288		80		20	0.995493
291	80	20			0.995493
294		20	80		0.995493
370		50		50	1.0
409	75			25	0.996473
413	33	33	33		0.997753
414	33	33		33	0.997753
415		25	75		0.996473
417		33	33	33	0.997753
418	33		66		0.997476
422		33		66	0.997476
423	33	66			0.997476
434			33	66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain