SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37329

Length: 928 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37329

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	basic helix-loop-helix (bHLH) family protein; K10863 aprataxin [EC:3.-.-.-]	-	-	52%
FL-Next	sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	basic helix-loop-helix family protein	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	0.0	66%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	66%
Blast2go	Metabolic pathways	01100		0.0	66%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:3.-.-.-	-	0.0	52%

Source	GOs	Term	Type	Identity
Blast2go	DNA ligation	GO:0006266	Biological Process	66%
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	66%
Blast2go	purine ribonucleotide metabolic process	GO:0009150	Biological Process	66%
Blast2go	single strand break repair	GO:0000012	Biological Process	66%
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	66%
Blast2go	DNA 5'-adenosine monophosphate hydrolase activity	GO:0033699	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Blast2go	Histidine triad-like motif	IPR011146	-	66%
Blast2go	Histidine triad motif	IPR011151	-	66%
Blast2go	Histidine triad, conserved site	IPR019808	-	66%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9M041

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 308 - 912

Fln protein: DGSTGLILVNSICLGKCPLDRC**LHFFQ*GMLCYLQGSSFITLNSREGRALQEFMISSFNCGIGIRRFTYSSSKLKTMQTDSTKGSTENTDQTGSSKKWPQWAQALRNVAIHPEKYKDKVLQSTDEAVVFPDLYPKGKKHVLVISRWDGLDRLADVGKEHLPLLQHMHKLGEDWITYFLNKDPSLIFRLGYHSVPSMRQLHLHVISQDFDSPCLKNAKHWNSFTSSFFRDSKKVLTELESHGKVTTCSKEEETRLLNSPLSCHRCRSIQKDITHLKDHIRKMHSTFPSELIPYTYSSSLSAFAVSDR

Protein Length: 309

Fln nts: CAGACGGGTCTACTGGGTTGATTCTAGTAAATTCTATTTGTCTAGGTAAATGTCCGCTGGATCGATGCTAATAATTGCATTTCTTCCAATAAGGCATGCTATGTTATCTGCAAGGTAGCTCATTTATCACTTTAAACAGCAGGGAAGGAAGAGCCTTGCAAGAGTTTATGATTTCTTCATTCAATTGTGGCATTGGAATACGTAGATTCACATACTCCAGTAGTAAGTTGAAAACCATGCAAACAGATTCTACAAAGGGGAGTACAGAGAATACAGACCAGACTGGGAGTTCAAAGAAGTGGCCACAATGGGCTCAAGCTTTGCGAAATGTAGCTATTCATCCAGAGAAATACAAGGATAAAGTACTACAGAGTACAGATGAAGCTGTGGTCTTTCCAGACTTGTACCCTAAGGGGAAGAAACATGTGCTAGTAATATCAAGATGGGATGGTCTTGACAGATTGGCAGATGTTGGTAAAGAACATTTACCATTGTTACAGCACATGCACAAGCTTGGAGAAGATTGGATCACATATTTTCTAAATAAGGACCCTTCATTGATCTTCCGGCTTGGTTATCACTCGGTTCCTTCAATGAGGCAATTACACCTGCACGTTATCAGTCAAGATTTTGATTCTCCTTGTTTGAAGAATGCAAAGCATTGGAATTCTTTCACTTCTTCATTTTTTCGGGATTCAAAGAAGGTCTTGACAGAGCTGGAATCACATGGGAAGGTGACCACATGCAGCAAGGAAGAAGAAACTAGACTTCTCAACTCTCCACTGAGTTGCCACCGATGCAGGAGCATACAGAAAGATATTACACATCTGAAAGATCATATTCGAAAAATGCACAGTACCTTTCCTTCTGAACTGATCCCTTATACATATTCTTCTAGTTTGTCCGCGTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene37329___RRFTYSSSKLKTMQTDSTKGSTENTDQTGS--SKKWPQWAQALRNVAIHPEKYKDKVLQSTDEAVVFPDLYPKGKKHVLVISRWDGLDRLADVGKEHLPLLQHMHKLGEDWITYFLNKDPSLIFRLGYHSVPSMRQLHLHVISQDFDSPCLKNAKHWNSFTSSFFRDSKKVLTELESHGKVTTCSKEEETRLLNSPLSCHRCRSIQKDITHLKDHIRKMHSTFPSELI
Q9M041_______________RNKKYKGSQDKAVTNNLESESLEDTRGSGKKMSKGWNTWALALHSIAMHPERHENVVLEYLDNIVVINDQYPKARKHVLVLARQESLDGLEDVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLHVISQDFNSDSLKNKKHWNSFTTSFFRDSVDVLEEVNSQGKANVASED----LLKGELRCNRCRSAHPNIPKLKSHVRSCHSQFPDHLL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
73	66		33		0.997452
74	33		33	33	0.997753
75			33	66	1.0
76			33	66	1.0
91	66		33		0.997452
106	66			33	0.997452
219	75			25	0.996473
235		75		25	0.996473
308	60		40		1.0
372	60		40		1.0
373			60	40	1.0
480	33		66		0.997452
491	66		33		0.997461
493		33		66	0.997461
496			33	66	0.997461
499	66	33			0.997461
500			66	33	0.997461
644		33		66	0.997452
648			33	66	0.997452
653		33	66		0.997452
654	66	33			0.997452
655	66			33	0.997452
658		66	33		0.997452
659	66	33			0.997453
660	66			33	0.997453
661	66		33		0.997453
662			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain