SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36792

Length: 249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene36792
AACTGTTCTTACGGTCATGAAGAATCTCCAGGCTAAAGTTGATGCTGGAATTGTTCAGCCCTATCGATTTGTGGAGATCAATGGGCTGAAACTTGCCCAGCCAGAGAATCTCTACAAGGTCCTTTATGAGGCATTGACTGGACATCGGGTAGGCTGGAAAAAAGCTCTTCATTTGTTAAATCAACGATTTTCAGAATCAAAACACACGAGCAAAGACAATAATCAACCGTGTGTTCTTCTTGTAGATGA

Ace file of the UniGene sp_v1.1_unigene36792 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	64%
Blast2go	origin recognition complex	-	-	1.58568e-27	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	1.58568e-27	81%
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	1.58568e-27	81%
Blast2go	double-stranded methylated DNA binding	GO:0010385	Molecular Function	1.58568e-27	81%
Blast2go	protein binding	GO:0005515	Molecular Function	1.58568e-27	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Origin recognition complex, subunit 1	IPR020793	-	1.58568e-27	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HNV8

Fln msg: Distance to subject end: 257 aas, your sequence is shorter than subject: 82 - 814

Fln protein: TVLTVMKNLQAKVDAGIVQPYRFVEINGLKLAQPENLYKVLYEALTGHRVGWKKALHLLNQRFSESKHTSKDNNQPCVLLVD

Protein Length: 83

Fln nts: AACTGTTCTTACGGTCATGAAGAATCTCCAGGCTAAAGTTGATGCTGGAATTGTTCAGCCCTATCGATTTGTGGAGATCAATGGGCTGAAACTTGCCCAGCCAGAGAATCTCTACAAGGTCCTTTATGAGGCATTGACTGGACATCGGGTAGGCTGGAAAAAAGCTCTTCATTTGTTAAATCAACGATTTTCAGAATCAAAACACACGAGCAAAGACAATAATCAACCGTGTGTTCTTCTTGTAGATGA

Fln Alignment:

sp_v1.1_unigene36792___TVLTVMKNLQAKVDAGIVQPYRFVEINGLKLAQPENLYKVLYEALTGHRVGWKKALHLLNQRFSESKHTSKDNNQPCVLLVD
B9HNV8_______________SVLAVMRNLKSEVDAGSIRPYCFVDVNGLKLASPENIYRAIYEALTGHRVSWKKALHLLNERFSDGKRTGKEDDRPCILLID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain