SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36175

Length: 341 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene36175
TCAGGTATGTAGTTTGGTCAAATGACATTGGAGAATGTTGCCTTACTGAGTAAGCATACAATCATTATTGCAAGCAAGAAGCTGTCAAGTAGGTGTAGTCTGCATGAAACTATTCGTGTTAAAAGTGGGCTTGGGATGACAATGGCATTTTTATGTACTCAACTTTAAATCACATAAAGTATTGTCTGCCAAATGGAGATAGTGGTATTATCAAGACGCTGGATGTTCCAGTATACATAACAAAGGTTTCTGGAAAGTCTCTCTATTGCCTCGATAGAGATGGCAAGAACCGTGTTATACAGATAGATGTTACCGAGTGTCTTTTCAAGCTAGCACTTAGC

Ace file of the UniGene sp_v1.1_unigene36175

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	predicted protein; K05236 coatomer protein complex, subunit alpha (xenin)	-	-	5.0e-31	69%
FL-Next	sp=Coatomer subunit alpha-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	protein	-	-	3.35343e-33	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	3.35343e-33	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.35343e-33	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Coatomer, WD associated region	IPR006692	-	3.35343e-33	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SJT9

Fln msg: Distance to subject end: 612 aas, your sequence is shorter than subject: 113 - 1218

Fln protein: RYVVWSNDIGECCLTE*AYNHYCKQEAVK*V*SA*NYSC*KWAWDDNGIFMYSTLNHIKYCLPNGDSGIIKTLDVPVYITKVSGKSLYCLDRDGKNRVIQIDVTECLFKLALS

Protein Length: 114

Fln nts: TCAGGTATGTAGTTTGGTCAAATGACATTGGAGAATGTTGCCTTACTGAGTAAGCATACAATCATTATTGCAAGCAAGAAGCTGTCAAGTAGGTGTAGTCTGCATGAAACTATTCGTGTTAAAAGTGGGCTTGGGATGACAATGGCATTTTTATGTACTCAACTTTAAATCACATAAAGTATTGTCTGCCAAATGGAGATAGTGGTATTATCAAGACGCTGGATGTTCCAGTATACATAACAAAGGTTTCTGGAAAGTCTCTCTATTGCCTCGATAGAGATGGCAAGAACCGTGTTATACAGATAGATGTTACCGAGTGTCTTTTCAAGCTAGCACTTAGC

Fln Alignment:

sp_v1.1_unigene36175___RYVVWSNDIGECCLTE*AYNHYCKQEAVK*V*SA*NYSC*KWAWDDNGIFMYSTLNHIKYCLPNGDSGIIKTLDVPVYITKVSGKSLYCLDRDGKNRVIQIDVTECLFKLAL
Q9SJT9_______________RYVVWSNDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAITINATEYIFKLAL

SNPs (tot: 4)

Position	A %	G %	T %	Probability
199		66	33	0.997453
200	66	33		0.997452
201		33	66	0.997452
202	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain