SustainPineDB

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Assembly info
Unigenes
SNPs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35911

Length: 397 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene35911
CAATTTAAAACCCAAGGCTGATGCGGCTGGAGTTGCAATTGCACCCACTGTTAAAACTGAGCCAATTCTCGACACAGTCAAGGAAGAAAAGGTTAGCGGTAACAACAACAACAATGTCTCCGCTAACAATGCCCAAGCTGCCCCTTCTGGTTCCGCTGTTTTACTCAGTGCTGTGAAAGAGGAGGCTACTAAGCCTACTTCTACCGATCACATCCAGACCAGCGGAGCCTATTGTGCTAGAGAAGAATCCCTCAAGAGAGAGGAAGACGCAGGTCGGCTTCAATTCGTTTGTTTCGGTAATGATGGAATTGATCAACACATGATCTGGCTTATTGGATTAAAGAATATATTTGCAAGGCAACTTCCAAACATGCCAAAAGAGTATATTGTTAGACTT

Ace file of the UniGene sp_v1.1_unigene35911

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SJ64_PHYPA	-	-	4.0e-28	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	histone acetyltransferase	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	84%
Blast2go	regulation of glucosinolate biosynthetic process	GO:0010439	Biological Process	84%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	84%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	84%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	84%
Blast2go	root morphogenesis	GO:0010015	Biological Process	84%
Blast2go	response to light stimulus	GO:0009416	Biological Process	84%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	84%
Blast2go	histone acetylation	GO:0016573	Biological Process	84%
Blast2go	H3 histone acetyltransferase activity	GO:0010484	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	histone acetyltransferase complex	GO:0000123	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: Distance to subject end: 313 aas, your sequence is shorter than subject: 132 - 630

Fln protein: NLKPKADAAGVAIAPTVKTEPILDTVKEEKVSGNNNNNVSANNAQAAPSGSAVLLSAVKEEATKPTSTDHIQTSGAYCAREESLKREEDAGRLQFVCFGNDGIDQHMIWLIGLKNIFARQLPNMPKEYIVRL

Protein Length: 133

Fln nts: CAATTTAAAACCCAAGGCTGATGCGGCTGGAGTTGCAATTGCACCCACTGTTAAAACTGAGCCAATTCTCGACACAGTCAAGGAAGAAAAGGTTAGCGGTAACAACAACAACAATGTCTCCGCTAACAATGCCCAAGCTGCCCCTTCTGGTTCCGCTGTTTTACTCAGTGCTGTGAAAGAGGAGGCTACTAAGCCTACTTCTACCGATCACATCCAGACCAGCGGAGCCTATTGTGCTAGAGAAGAATCCCTCAAGAGAGAGGAAGACGCAGGTCGGCTTCAATTCGTTTGTTTCGGTAATGATGGAATTGATCAACACATGATCTGGCTTATTGGATTAAAGAATATATTTGCAAGGCAACTTCCAAACATGCCAAAAGAGTATATTGTTAGACTT

Fln Alignment:

sp_v1.1_unigene35911___NLKPKADAAGVAIAPTVKTEPILDTVKEEKVSGXXXXXXXXXXXXXX--PSGSAVLLSAVKEEATKPTSTDHIQTSGAYCAREESLKREEDAGRLQFVCFGNDGIDQHMIWLIGLKNIFARQLPNMPKEYIVRL
B8LPU6_______________NLKPKADAAGVAVATTVKTETILDTVKAEKISSNNNNNNNVSANNAQVAPSGSAVLLSAVKEEANKPTSTDHIQTSGAYCAREESLKREEDADRLKFVCFGNDGIDQHMIWLIGLKNIFARQLPNMPKEYIVRL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
135	75		25		0.996473
136	75			25	0.996473
137		25	75		0.996473
138		75	25		0.996473
141	25	75			0.996473
144		75		25	0.996473
147			25	75	0.996473
153		25		75	0.996473
154	25	75			0.996473
156			75	25	0.996473
158	33	33		33	0.997753
290			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain