SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29842

Length: 480 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene29842
CGTCGTGACCTTGGCTGTCACTCATGATTCTCCTTGTTTGAAGAATGCAAAGCATTGGAATTCTTTCACTACTTCATTTTTTCGGGATTCAAAGAAGGTCTTGACAGAGCTGGAATCACATGGAAAGGTGACCACATGCAGCAAGGAAGAAGAAACTAGACTTCTCAACTCTCCACTGAGTTGCCACCGATGCAGGAGCATACAGAAAGATATTACACATCTGAAAGATCATATTCGAAAATGCACAGTACCTTTCCCTTCTGAACTGATCCCTTATACATATTCTTCTAGTTTGTCTGCGTAATAAGACCATATCAATAAATACCTAGTACCTCTCCCTACGGAACTGTTAGCTTGTGTACATGTTTCTCATTTTTATACCTAGCATGCTCATAACTGAAATCAAGTCTGCGAGTCTCTTTTGCAGGCAAATCAGCTAGTAATTACCCAATGCTTAGTCAAATGATTTCCCATTGATTT

Ace file of the UniGene sp_v1.1_unigene29842 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	basic helix-loop-helix (bHLH) family protein; K10863 aprataxin [EC:3.-.-.-]	-	-	2.0e-15	51%
FL-Next	sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Blast2go	fha-hit protein	-	-	3.78935e-21	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	3.78935e-21	63%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		3.78935e-21	63%
Blast2go	Metabolic pathways	01100		3.78935e-21	63%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:3.-.-.-	-	2.0e-15	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	3.78935e-21	63%
Blast2go	purine ribonucleotide metabolic process	GO:0009150	Biological Process	3.78935e-21	63%
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	3.78935e-21	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histidine triad-like motif	IPR011146	-	3.78935e-21	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9M041

Fln msg: your sequence is shorter than subject: 101 - 912

Fln protein: VVTLAVTHDSPCLKNAKHWNSFTTSFFRDSKKVLTELESHGKVTTCSKEEETRLLNSPLSCHRCRSIQKDITHLKDHIRKCTVPFPSELIPYTYSSSLSA*

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATTCTCCTTGTTTGAAGAATGCAAAGCATTGGAATTCTTTCACTACTTCATTTTTTCGGGATTCAAAGAAGGTCTTGACAGAGCTGGAATCACATGGAAAGGTGACCACATGCAGCAAGGAAGAAGAAACTAGACTTCTCAACTCTCCACTGAGTTGCCACCGATGCAGGAGCATACAGAAAGATATTACACATCTGAAAGATCATATTCGAAAATGCACAGTACCTTTCCCTTCTGAACTGATCCCTTATACATATTCTTCTAGTTTGTCTGCGTAA___TAAGACCATATCAATAAATACCTAGTACCTCTCCCTACGGAACTGTTAGCTTGTGTACATGTTTCTCATTTTTATACCTAGCATGCTCATAACTGAAATCAAGTCTGCGAGTCTCTTTTGCAGGCAAATCAGCTAGTAATTACCCAATGCTTAGTCAAATGATTTCCCATTGATTT

Fln Alignment:

sp_v1.1_unigene29842___DSPCLKNAKHWNSFTTSFFRDSKKVLTELESHGKVTTCSKEEETRLLNSPLSCHRCRSIQKDITHLKDHIRKCTVPFPSELI
Q9M041_______________NSDSLKNKKHWNSFTTSFFRDSVDVLEEVNSQGKANVASED----LLKGELRCNRCRSAHPNIPKLKSHVRSCHSQFPDHLL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
61	66	33			0.997452
67	33	66			0.997452
72	66		33		0.997452
97	33		66		0.997452
146		14	85		0.993533
150			85	14	0.993533
207		16		83	0.994512
315	66			33	0.997452
318		33		66	0.997452
319	33			66	0.997452
321	66	33			0.997452
322		33	66		0.997452
329	25			75	0.996481
330	75	25			0.996478
332	25			75	0.996478
333		25		75	0.996478
334			25	75	0.996478
394		66		33	0.997454
400	66		33		0.997459
403	33	66			0.997459
407	66	33			0.997476
408	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain