SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28920

Length: 1740 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28920

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Squamosa promoter-binding protein, putative	-	-	42%
FL-Next	sp=Squamosa promoter-binding-like protein 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	43%
Blast2go	spl1-related2 protein	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	61%
Blast2go	DNA binding	GO:0003677	Molecular Function	61%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	61%
Blast2go	plasma membrane	GO:0005886	Cellular Component	61%
Blast2go	nucleus	GO:0005634	Cellular Component	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat	IPR002110	-	0.0	61%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	0.0	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RY95

Fln msg: your sequence is shorter than subject: 357 - 1035

Fln protein: CFPVIVADPIICRELQSLESEIENEFSNDKTSSLKVERSQEHFQGYSAATARDEVISFLNELGWLFQKSTERQAELNVVKDASFLEFSSDRFKFLFIYAVERDMCALLKKLLDMFFEMNAGKEASAPESSKNLLESNLLHRAVKRNCKQMVDLLLNYAPSPNNMNLLQTKSFIFPPNLTGPGGLTPLHLAASIRNSEPLVDALTSDPQDVGLQSWSTALDSSGQTPHAYALLRNNHSYNRLVERKLADRKHGQVSITISNNEASLDGIAADVNGSHTGSSVLSLQKLPQSCAQCMIFSNKRVRRITGSPGALYRPYMHSILAIAAVCVCVCLYFHGPPHVGSSGPFKWENVDFGPA*

Protein Length: 358

Fln nts: ATTGTTTTCCTGTTATTGTTGCAGACCCTATCATCTGTAGAGAGCTGCAAAGCCTTGAATCTGAGATTGAAAATGAGTTCTCGAATGACAAAACAAGCTCCTTAAAAGTTGAACGTTCACAAGAACATTTTCAAGGTTACAGTGCAGCAACAGCTAGGGATGAAGTAATCAGTTTCTTAAATGAGTTAGGATGGCTCTTTCAAAAGAGTACCGAGCGGCAAGCGGAGCTAAACGTTGTGAAGGATGCTTCTTTTCTTGAATTTTCATCTGATCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAGGGACATGTGTGCTCTTCTGAAGAAGCTTTTGGACATGTTTTTTGAAATGAATGCTGGGAAGGAAGCTTCAGCTCCAGAGTCATCCAAAAACTTGCTTGAAAGTAATTTATTGCACAGGGCAGTGAAGAGAAATTGTAAACAGATGGTAGATTTGCTCCTCAACTATGCTCCCTCACCAAATAACATGAATTTGCTGCAAACAAAATCTTTCATCTTCCCTCCAAATCTGACAGGTCCAGGTGGCCTTACACCATTACATTTGGCAGCCAGCATACGTAATAGTGAGCCCTTGGTAGATGCATTGACAAGTGATCCGCAAGATGTTGGCTTACAATCCTGGAGTACAGCACTGGATTCAAGTGGTCAGACCCCTCACGCATATGCTTTGCTTCGGAATAATCACTCATATAACAGATTGGTTGAAAGAAAATTGGCAGACAGGAAACATGGTCAGGTATCAATAACAATTTCCAACAATGAAGCATCTTTAGATGGGATTGCAGCAGATGTAAACGGGTCGCACACAGGTTCGTCTGTCTTGTCATTGCAGAAGCTTCCTCAAAGTTGTGCGCAATGCATGATTTTTAGTAACAAAAGAGTGAGAAGGATAACAGGTAGTCCAGGAGCTTTGTATCGTCCATATATGCATTCTATTCTGGCAATTGCAGCGGTATGTGTATGTGTTTGCCTTTATTTCCATGGTCCACCACATGTTGGTTCGTCTGGACCATTCAAGTGGGAAAATGTTGATTTCGGTCCCGCTTGA___AGTTGTTTTATATATAGCCTTCGTATGATTGCTGTACATGATGTTGTGCCATCGGACTCAATATTCAACCATGAAGGTGTTGCTGTTATTCACAATATGCTATCTTGTCAAAAGACAAGGTAGATTGAGGCGGCAGTTTTATCCAGTCCTGTCCTGTCTGGATACAGCAACAAGAGACTGCAAAAAATAGAGATTATTATGGAATTGCATATCCTTTCGGGCCTCTACTACTGCTAAGAGCTCATTCATATTCTCAGTTATTTTGGGGGCGGGGAAGTATTAATTTAATCTGCATAGCATAGTGTTTTGTTCCTCCACAGAAAAAAGATTCCGACCGGTAGTCAAAGGGTGAACATACAACTAGGGTCTGCTTTCTTGTTACTTTGGATGATGCTCTGGAGGTAACTACTTTCGCTGTGCAGAAAATCCCATTTTACACGCCTACCCTGGCAACATTTACAGGCAGATGATGTTTCTAATTTCCATATATCTGATATTTATGTACTACTCGATGCTGGTGCCCGGGGCATTTTGGAAATTTTTGGCTAAATAAGCGTCTCATTCCAGTAAATAACCAAAAATTGTGGCTAGTTTCAaAAATCTTATGCTGTTGTGATAATATTCTTTATGATCTTATGGTTATAAAATAAATGCGCTATTAAATACT

Fln Alignment:

sp_v1.1_unigene28920___FPVIVADPIICRELQSLESEIENEFSNDKTSSLKVERSQEHFQGYSAATARDEVISFLNELGWLFQKSTERQAELNVVKDASFLEFSSDRFKFLFIYAVERDMCALLKKLLDMFFEMNAGKEASAPXXXXXXXXXXXXHRAVKRNCKQMVDLLLNYAPSPNNMNLLQTKSFIFXXXXXXXXXXXXXXXAASIRNSEPLVDALTSDPQDVGLQSWSTALDSSGQTPHAYALLRNNHSYNRLVERKLADRKHGQVSITISNNEASLDGIAADVNGSHTGSSVLSLQKLPQSCAQCMIFSNKRVRRITGSPGALYRPYMHSILAIAAVCVCVCLYFHGPPHVGSSGPFKWENVDFG
Q8RY95_______________FPLIIANASICKELNRLGEEF-----HPKSQDMTEEQAQSSNRG---PTSREEVLCFLNELGWLFQKN--QTSELREQSD-----FSLARFKFLLVCSVERDYCALIRTLLDMLVERNLVNDELNREALDMLAEIQLLNRAVKRKSTKMVELLIHYLVNP--LTLSSSRKFVFLPNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTPYSYAAIRNNHNYNSLVARKLADKRNKQVSLNIEHEVVDQTGLSKRLS--------LEMNKSSSSCASCATVALKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGGLDYG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1671		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain