SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26418

Length: 856 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26418

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO	-	-	5.0e-33	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	histone acetyltransferase	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	71%
Blast2go	regulation of glucosinolate biosynthetic process	GO:0010439	Biological Process	71%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	71%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	71%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	71%
Blast2go	root morphogenesis	GO:0010015	Biological Process	71%
Blast2go	response to light stimulus	GO:0009416	Biological Process	71%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	71%
Blast2go	histone acetylation	GO:0016573	Biological Process	71%
Blast2go	H3 histone acetyltransferase activity	GO:0010484	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	DNA binding	GO:0003677	Molecular Function	71%
Blast2go	histone acetyltransferase complex	GO:0000123	Cellular Component	71%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
453	75	25			1.0
455		75		25	1.0
456	75	25			1.0
464			75	25	1.0
467	75		25		1.0
468		25		75	1.0
508		11	88		0.923564
510		88		11	0.923564
511		11		88	0.923564
517		88		11	0.923564
519		88	11		0.923564
520	88	11			0.923564
523			88	11	0.923564
524		18		81	0.999994
541			10	90	0.90298
543		10	90		0.90298
545	90	10			0.90298
547		10		90	0.90298
548	10		90		0.90298
678	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain