SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25875

Length: 1888 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25875

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RAV2; RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor/ transcription repressor; K09287 RAV-like factor	-	-	62%
FL-Next	tr=APETALA2-like protein 2; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	43%
Blast2go	ap2 domain-containing transcription factor	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Blast2go	AP2/ERF domain	IPR001471	-	69%
Blast2go	B3 DNA binding domain	IPR003340	-	69%
Blast2go	DNA-binding pseudobarrel domain	IPR015300	-	69%
Blast2go	DNA-binding, integrase-type	IPR016177	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q76H94

Fln msg: your sequence is shorter than subject: 461 - 554

Fln protein: MEADSARADTEETGSLTDDQDSNSSPATGGKSVSSNASSSLADRAELERKGSGISVISSENIHSTSCDEEKSCKKLPSSQYKGVVPQPNGRWGAQIYEKHQRVWLGTFNLEKDAARAYDRAAVKFRGADAVTNFNMVDTHPEAVFLRQHSKGEIVDMLRKHTYDEELDQNNNASRNKSSADINTEVAGSIPHEPREHLFDKAVTPSDVGKLNRLVIPKQHAEKYFPLDVAAGGGKAKGILLNFEDSTDKTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLQAGDIVTFERSSLSRHLFITFCRRPINILLPTAPPPPQRCPPSVNPFAVVGYPHWAQFFYVPPPVMNAVPRSSTPGRGGHPNSHDPAELCDKAAESTQSDNGNPSSLVFVNLLRTSPSIDGNSFSSSSVRLFGVNLQQSPLNLFPTVEEERIEQGEKRKTVPPKLPGLFLGGKKLCARQGM*

Protein Length: 462

Fln nts: TACTTATTTGGGGTAGGTACAGTCTTCTGAGATTTTTCTTAAGCTGCACTTGCCCGTTTACTTAGTCGGTGCTTCTTTCGATACATATGCTAAATTCCGACAGTATAAGTCCTGAGTATATCCCCCCAACTGGGTCAGAGGTATGCAAGTTTCGATGGCTGCTCCAATATGTCTTACAGTGCTGTGGCTGTGCCCACGCAGGATTTTCCATACAATTTGCTTAAGGCCATTTCCGATGACAATAAGGGTCTAAGATTAGGCAGATGCTAGTCCCGTGCAGGGCGAGATCTCCTGTAATTTAAGCGAGCTAAGCTCTAATTCGACATCATTCACGAAAGCG_-_ATGGAAGCTGATTCAGCGAGAGCAGACACTGAGGAAACAGGGAGCTTGACCGACGACCAAGACTCGAACTCGTCACCTGCAACTGGTGGTAAGTCAGTTTCTTCTAATGCTTCTTCTTCGTTAGCCGATCGGGCAGAGCTGGAACGGAAGGGGAGCGGAATCAGCGTCATCTCCTCCGAGAACATTCATAGTACTTCTTGCGATGAGGAGAAATCGTGCAAGAAGCTGCCGTCGTCGCAATACAAGGGCGTCGTCCCGCAGCCCAACGGCCGTTGGGGCGCTCAGATTTATGAGAAGCATCAGCGTGTGTGGCTCGGCACCTTCAACCTGGAAAAAGACGCCGCCAGGGCTTACGACAGGGCCGCCGTGAAGTTCCGCGGCGCCGACGCCGTGACGAACTTCAACATGGTCGATACTCACCCGGAGGCCGTCTTTCTTCGTCAGCACTCAAAGGGCGAGATCGTCGACATGCTCAGAAAGCACACCTACGACGAGGAACTCGACCAGAACAACAACGCTAGCCGGAATAAGAGCTCTGCCGACATAAATACCGAAGTCGCGGGCTCGATTCCCCACGAGCCACGCGAGCACCTCTTCGACAAGGCCGTGACGCCCAGCGACGTCGGAAAGCTGAACCGGCTCGTCATCCCGAAGCAGCACGCGGAGAAATACTTCCCACTTGACGTGGCGGCGGGCGGGGGAAAGGCGAAAGGGATCCTGCTAAATTTTGAGGACAGCACCGACAAAACATGGCGGTTCCGCTATTCTTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTTTGTCAAAGAGAAACGCCTCCAGGCCGGCGACATCGTTACCTTTGAGCGGAGCTCCCTGTCCCGCCACCTCTTCATCACCTTCTGCCGCCGCCCCATCAATATCCTCCTTCCGACCGCTCCGCCGCCGCCCCAACGCTGTCCACCGTCCGTTAACCCGTTTGCCGTGGTAGGGTATCCGCACTGGGCCCAGTTCTTCTACGTGCCGCCGCCAGTCATGAACGCCGTCCCTCGTTCTTCGACTCCTGGCCGTGGCGGCCACCCCAATTCTCACGACCCCGCTGAATTATGCGATAAGGCAGCGGAGTCGACCCAGTCAGATAACGGGAATCCGTCGTCGTTGGTCTTCGTGAACCTGCTTAGAACCTCTCCGTCAATAGACGGCAATTCCTTTTCTTCTTCGTCCGTCCGGCTGTTTGGCGTGAACCTACAGCAGTCGCCGTTAAATCTTTTCCCTACGGTTGAGGAAGAGAGGATTGAGCAGGGAGAGAAGCGGAAAACGGTACCGCCAAAACTTCCGGGGTTGTTTCTCGGCGGGAAAAAACTGTGCGCCAGGCAAGGCATGTAA___TATGAGTGGAATTTGTTTAGACAATCTTTTATCACGTGTATAAATACTTAAATTACACCGGTTTTACGGAGATGTAAAAACATAGAGTTCCATAGCAGTGAACTCTTAGCACGGCGTACCTTTTTTGGAGAATTAATTTGGTTAAATATTTTATTTTCTCATGAC

Fln Alignment:

sp_v1.1_unigene25875___SSQYKGVV-PQPNGRWGAQIYEKHQRVWLGTFNLEKDAARAYDRAAVKFRGADAVTNFNMVDTHPEAVFLRQHSKGEIVDMLRKHTYDEELDQNNNASRNKS
Q76H94_______________SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGQDADINFNLSDYEDDLKQLNNLTKEEFVHILRR--------QSNGFSRGSS

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
527			11	88	0.923564
528		88	11		0.923564
529	88		11		0.923564
611	11	88			0.923564
612		88		11	0.923564
614			11	88	0.923564
615			11	88	0.923564
667	88			11	0.923564
668		88	11		0.923564
669		88	11		0.923564
670			11	88	0.923564
672	11		88		0.923564
1109	33			66	0.997452
1111	66		33		0.997452
1112		66	33		0.997452
1113			33	66	0.997452
1118		66		33	0.997452
1140	75		25		0.996473
1141		75		25	0.996473
1142		75	25		0.996473
1143	75		25		0.996473
1144	75		25		0.996473
1255			83	16	0.994512
1280	16		83		0.994512
1281		83		16	0.994512
1282		83	16		0.994512
1284		83	16		0.994512
1291	83		16		0.994512
1590		77		22	0.999999
1672		20		80	0.995493
1673			20	80	0.995493
1738	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain