SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23765

Length: 1096 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23765

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9SPB6_RICCO	-	-	7.0e-15	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	auxin response factor 1	-	-	1.20093e-14	50%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	1.20093e-14	50%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	1.20093e-14	50%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.20093e-14	50%
Blast2go	protein binding	GO:0005515	Molecular Function	1.20093e-14	50%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
326	75		25		0.996473
360	75	25			0.996473
582	25			75	0.996473
584		75	25		0.996473
585		75	25		0.996473
586	75		25		0.996473
655			50	50	1.0
668	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain