SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23075

Length: 2190 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23075
CGTCGTGACCTTGGCTGTCACTCAACTTGTCCATTGGAACACAAATTAGAAATATTATGAGAATATGCTGAGTGTCTATCTTATATACCATTTTTTCATCCAACCGTGAAGGTTCCCCACGTCTCTTTTGATGGGACCGTCACGTGGTCCCAAGTGGGTAGCTTACCTGGTTCCGGCACCTATATATATAGATAGAAGGATAGTATCATAGACCGTGGTGAATTTTGTAAGTTCAGAGATCTGTTAATCGATCAATTGTTTTTCATAGATCATCAATTAATCTCCAGACACCATGGCAACCATCGTATCAGTGAAAGCCAGGTCGATTTTTGACAGTCGTGGAAATCCAACTGTAGAGGTAGATATTTATCTTTCTGATGGTTATCTTTCCAGAGCTGCTGTTCCAAGTGGTGCTTCCACTGGTGTTTATGAAGCATTGGAGCTTCGTGATGGAGGGAAGAGCTATATGGGAAAGGGTGTCTCAAAGGCTGTTGAAAACGTCAATAAAATTATTGGACCAGCTCTTATTGGCAAGGATCCAGTAGATCAGACTGGAATTGATAACTTCATGGTACAGGAGCTTGATGGAACTCAAAATCAATGGGGCTGGTGCAAACAAAAGCTTGGAGCAAATGCTATATTAGCTGTATCTCTTGCAGTTTGTAAAGCAGGAGCTCATGTTAAGAAGATACCTCTGTATCAGCATATTGCAAACATTGCTGGTAACAAAACATTGGTGATGCCAGTACCTGCTTTCAATGTCATCAATGGAGGTTCACATGCAGGAAATAAACTGGCAATGCAGGAGTTTATGATTCTTCCTGTTGGAGCTTCTTCATTTAGAGAGGCCATGCAGATGGGTTCAGAAGTTTACCATCATTTGAAGGCTGTAATTAAGAAAAAGTATGGTCAAGATGCAACAAATGTTGGAGACGAAGGAGGCTTTGCTCCAAACATTCAGGAGAATAAAGAAGGCCTGGAATTATTGAAGATTGCCATTGAGAAAGCAGGGTATACTGGCAAGGTTGTTATTGGTATGGATGTAGCTGCTTCTGAGTTTTATACTGAGAAGGATCAAAAGTATGATTTGAACTTCAAGGAGGAGAATAATAATGGTAGCCAAAAGATATCAGGATCTGAGCTGATCAAGCTTTACGAATCGTTTATTGAGGATTATCCAATTGTATCTATAGAGGACCCATTTGATCAAGATGATTGGGCTCACTATGCACAATTTACGGCGACAATTGGGGAAAAGGTGCAAATTGTTGGTGATGATCTATTGGTGACAAATCCAAAGCGTGTTGGAAAGGCAATCAATGAAAAATCCTGCAATGCTCTTTTACTAAAGGTGAATCAAATTGGTTCTGTTACTGAAAGTATTGAAGCAGTAAAAATGTCTAAACGTGCTGGATGGGGAGTGATGACAAGCCATCGCAGTGGCGAAACTGAAGATACCTTTATTGCAGATCTGGCAGTGGGCTTGGCCACGGGCCAAATCAAGACAGGTGCTCCCTGTAGGTCCGAGCGACTTGCCAAATATAATCAGCTCTTACGAATTGAGGAGGAATTGGGATCGGCCGCAGTGTATGCAGGCGCAAGTTTCCGCAAGCCCGTAGAGCCGTACTAAATACAAATGTTTAGGATGTGAGGAGATAATAAAATTTTACGTTTTTTCTTGGTTTTGCTTGGAGAGAGCCTTCTAATGGCGAGAATAGGGATAAAGGATAAATAGTTCTGAATGCTTAACCTCCTTCAATTTATAAGAAAGGGTAGCCGAAAAATGAATTCAATATATATGTTGCTTCCAACATGTCTCAACGAGGATCGTATTACATACAAGTCTTTATTTGATATTAAAGAGGTCTAACTTATTAGGTCGCCAATGCTAGAGAGAATTTTGGATGCTGAGAATTCTGGTGAAATAAAAATGTATATTATTTTGTCTGCAGTATGTTTATTGCAGTGACACTTTTTCATGGCAATTTTTGAGGCTGTCCTTTAAAGATGTATTCCAGTGCAATTGTTATTCTCTGTAAAATGTTTATGTGAAGATTCATCGCGAGGGTGCTAGAATGTTCAACCAGTCAGTCTTTTGACATTGTCTTAACGTGAGCATTATAATGGTCAAAACATGTTGTTGTTGTTGTGAAGATGTATGATGAAGGTATTTGAATGTTACAAATAAAC

Ace file of the UniGene sp_v1.1_unigene23075

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Enolase n=3 Tax=Picea sitchensis RepID=B8LL07_PICSI	-	-	98%
FL-Next	sp=Enolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	enolase	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	93%

Source	InterPros	Term	Type	Identity
Blast2go	Enolase	IPR000941	-	93%
Blast2go	Enolase, conserved site	IPR020809	-	93%
Blast2go	Enolase, C-terminal	IPR020810	-	93%
Blast2go	Enolase, N-terminal	IPR020811	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL07

Fln msg:

Fln protein: MATIVSVKARSIFDSRGNPTVEVDIYLSDGYLSRAAVPSGASTGVYEALELRDGGKSYMGKGVSKAVENVNKIIGPALIGKDPVDQTGIDNFMVQELDGTQNQWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYQHIANIAGNKTLVMPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMQMGSEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKIAIEKAGYTGKVVIGMDVAASEFYTEKDQKYDLNFKEENNNGSQKISGSELIKLYESFIEDYPIVSIEDPFDQDDWAHYAQFTATIGEKVQIVGDDLLVTNPKRVGKAINEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGSAAVYAGASFRKPVEPY*

Protein Length: 447

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTGTCCATTGGAACACAAATTAGAAATATTATGAGAATATGCTGAGTGTCTATCTTATATACCATTTTTTCATCCAACCGTGAAGGTTCCCCACGTCTCTTTTGATGGGACCGTCACGTGGTCCCAAGTGGGTAGCTTACCTGGTTCCGGCACCTATATATATAGATAGAAGGATAGTATCATAGACCGTGGTGAATTTTGTAAGTTCAGAGATCTGTTAATCGATCAATTGTTTTTCATAGATCATCAATTAATCTCCAGACACC_-_ATGGCAACCATCGTATCAGTGAAAGCCAGGTCGATTTTTGACAGTCGTGGAAATCCAACTGTAGAGGTAGATATTTATCTTTCTGATGGTTATCTTTCCAGAGCTGCTGTTCCAAGTGGTGCTTCCACTGGTGTTTATGAAGCATTGGAGCTTCGTGATGGAGGGAAGAGCTATATGGGAAAGGGTGTCTCAAAGGCTGTTGAAAACGTCAATAAAATTATTGGACCAGCTCTTATTGGCAAGGATCCAGTAGATCAGACTGGAATTGATAACTTCATGGTACAGGAGCTTGATGGAACTCAAAATCAATGGGGCTGGTGCAAACAAAAGCTTGGAGCAAATGCTATATTAGCTGTATCTCTTGCAGTTTGTAAAGCAGGAGCTCATGTTAAGAAGATACCTCTGTATCAGCATATTGCAAACATTGCTGGTAACAAAACATTGGTGATGCCAGTACCTGCTTTCAATGTCATCAATGGAGGTTCACATGCAGGAAATAAACTGGCAATGCAGGAGTTTATGATTCTTCCTGTTGGAGCTTCTTCATTTAGAGAGGCCATGCAGATGGGTTCAGAAGTTTACCATCATTTGAAGGCTGTAATTAAGAAAAAGTATGGTCAAGATGCAACAAATGTTGGAGACGAAGGAGGCTTTGCTCCAAACATTCAGGAGAATAAAGAAGGCCTGGAATTATTGAAGATTGCCATTGAGAAAGCAGGGTATACTGGCAAGGTTGTTATTGGTATGGATGTAGCTGCTTCTGAGTTTTATACTGAGAAGGATCAAAAGTATGATTTGAACTTCAAGGAGGAGAATAATAATGGTAGCCAAAAGATATCAGGATCTGAGCTGATCAAGCTTTACGAATCGTTTATTGAGGATTATCCAATTGTATCTATAGAGGACCCATTTGATCAAGATGATTGGGCTCACTATGCACAATTTACGGCGACAATTGGGGAAAAGGTGCAAATTGTTGGTGATGATCTATTGGTGACAAATCCAAAGCGTGTTGGAAAGGCAATCAATGAAAAATCCTGCAATGCTCTTTTACTAAAGGTGAATCAAATTGGTTCTGTTACTGAAAGTATTGAAGCAGTAAAAATGTCTAAACGTGCTGGATGGGGAGTGATGACAAGCCATCGCAGTGGCGAAACTGAAGATACCTTTATTGCAGATCTGGCAGTGGGCTTGGCCACGGGCCAAATCAAGACAGGTGCTCCCTGTAGGTCCGAGCGACTTGCCAAATATAATCAGCTCTTACGAATTGAGGAGGAATTGGGATCGGCCGCAGTGTATGCAGGCGCAAGTTTCCGCAAGCCCGTAGAGCCGTACTAA___ATACAAATGTTTAGGATGTGAGGAGATAATAAAATTTTACGTTTTTTCTTGGTTTTGCTTGGAGAGAGCCTTCTAATGGCGAGAATAGGGATAAAGGATAAATAGTTCTGAATGCTTAACCTCCTTCAATTTATAAGAAAGGGTAGCCGAAAAATGAATTCAATATATATGTTGCTTCCAACATGTCTCAACGAGGATCGTATTACATACAAGTCTTTATTTGATATTAAAGAGGTCTAACTTATTAGGTCGCCAATGCTAGAGAGAATTTTGGATGCTGAGAATTCTGGTGAAATAAAAATGTATATTATTTTGTCTGCAGTATGTTTATTGCAGTGACACTTTTTCATGGCAATTTTTGAGGCTGTCCTTTAAAGATGTATTCCAGTGCAATTGTTATTCTCTGTAAAATGTTTATGTGAAGATTCATCGCGAGGGTGCTAGAATGTTCAACCAGTCAGTCTTTTGACATTGTCTTAACGTGAGCATTATAATGGTCAAAACATGTTGTTGTTGTTGTGAAGATGTATGATGAAGGTATTTGAATGTTACAAATAAAC

Fln Alignment:

sp_v1.1_unigene23075___MATIVSVKARSIFDSRGNPTVEVDIYLSDGYLSRAAVPSGASTGVYEALELRDGGKSYMGKGVSKAVENVNKIIGPALIGKDPVDQTGIDNFMVQELDGTQNQWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYQHIANIAGNKTLVMPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMQMGSEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKIAIEKAGYTGKVVIGMDVAASEFYTEKDQKYDLNFKEENNNGSQKISGSELIKLYESFIEDYPIVSIEDPFDQDDWAHYAQFTATIGEKVQIVGDDLLVTNPKRVGKAINEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGSAAVYAGASFRKPVEPY
B8LL07_______________MATIKAVKARSIFDSRGNPTVEVDIHLSDGYLSRAAVPSGASTGVYEALELRDGGKDYMGKGVSKAVGNVNKIIGPALIGKDPVDQTGIDNFMVQELDGTQNQWGWCKQKLGANAILAVSLAVCKAGAYVKKIPLYQHIANIAGNKTLVMPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMQMGSEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKIAIEKAGYTGKVVIGMDVAASEFYTEKDQKYDLNFKEENNNGSQKISGSELIKLYESFIEDYPIVSIEDPFDQDDWAHYAQFTATIGEKVQIVGDDLLVTNPKRVGKAINEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSAAVYAGASFRQPVEPY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
391		22		77	1.0
1560		3		96	0.993037
1677		8		66	1.0
1949	6		93		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2136	2150	TGT TGT TGT TGT TGT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain