SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22442

Length: 1903 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22442

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aminoacyl-tRNA ligase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	tryptophanyl-trna synthetase	-	-	88%

Source	ECs	Term	Type	e value	Identity
AutoFact	Tryptophan--tRNA ligase.	EC:6.1.1.2	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Tryptophan metabolism	00380		0.0	81%
AutoFact	Aminoacyl-tRNA biosynthesis	00970		0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	0.0	88%

Source	InterPros	Term	Type	Identity
Blast2go	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	88%
Blast2go	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	88%
Blast2go	Tryptophanyl-tRNA synthetase	IPR002306	-	88%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLD4

Fln msg:

Fln protein: MEGRLKSENEITDEREVKVEGSHQSQNENAEDESQIVTPWEVAAKEGGRIDYDKLIVQFGCQKLDQSIVERVEKLTDKPAHVFLRRGVFFAHREFDKILDAFEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLTIEESQRLARENAKDIIACGFDISRTFIFSDFDYVGGAFYKNMVRIAKCVTLNQVKGIFGFTGEDHIGKVSFPPVQAAPSFPSSFPHLFGDKNDLRCLIPCAIDQDPYFRMTRDVAPRIGCHKPSLIESLFFPALQGETGKMSASDSTTAIYVTDSAKDIKNKVNKYAFSGGGDTIENHRKFGANLEVDISVKYLGFFLEDDAELENIKQEYGAGRMLTGEVKKLLIEVLTNLVERHRQARAAVTDEVVDVFMTPRPLPDMFG*

Protein Length: 423

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGGAGTTTGTCCATTTGGGTCTCTGTCTTCTTCATCGCATCGCAAGAGGAGAA_-_ATGGAAGGAAGGCTGAAGAGTGAGAATGAGATTACAGACGAGCGGGAGGTGAAGGTGGAGGGAAGCCATCAGAGTCAGAATGAGAATGCAGAGGACGAAAGCCAGATCGTGACTCCATGGGAAGTAGCTGCTAAAGAGGGAGGGCGCATTGATTATGACAAGCTCATTGTGCAATTCGGCTGTCAAAAACTAGATCAATCAATTGTCGAAAGGGTGGAGAAACTCACTGACAAGCCTGCCCATGTCTTTCTCCGCCGCGGTGTTTTCTTCGCTCACAGGGAATTTGACAAGATTCTTGATGCATTTGAGAAAGGAGAAAAGTTCTATTTATATACTGGCAGAGGACCTTCATCTGAAGCTTTGCATTTGGGACATCTCGTGCCATTTATGTTTACAAAATATTTACAAGATGCATTCAAAGTACCACTTGTAATACAACTCACTGATGATGAGAAATGCATGTGGAAGAATCTTACTATTGAAGAAAGTCAGAGACTTGCCCGTGAAAATGCCAAAGATATAATTGCATGTGGTTTTGATATTTCAAGAACATTCATATTTTCTGATTTTGACTATGTTGGGGGAGCCTTCTACAAGAACATGGTTAGAATTGCCAAATGCGTTACCTTGAATCAGGTAAAAGGAATATTTGGCTTCACTGGGGAGGACCACATTGGAAAAGTCAGTTTTCCTCCCGTACAGGCAGCTCCATCTTTTCCATCTTCATTCCCTCATTTGTTTGGTGATAAAAATGATCTTCGGTGCTTGATTCCCTGTGCAATAGATCAGGATCCTTATTTTAGGATGACACGAGATGTTGCACCAAGAATAGGATGTCACAAGCCTTCTCTTATTGAATCCCTGTTTTTTCCAGCACTTCAGGGGGAGACAGGAAAAATGTCTGCAAGTGATTCCACTACAGCAATATATGTAACTGATTCTGCCAAGGACATCAAGAACAAGGTGAATAAATATGCCTTCTCTGGAGGTGGAGATACAATAGAGAATCATAGGAAATTCGGGGCAAATCTTGAGGTGGATATATCGGTCAAGTATCTTGGCTTCTTTCTCGAGGATGATGCAGAATTGGAAAACATTAAACAAGAATATGGAGCTGGAAGAATGCTTACTGGGGAAGTTAAAAAGCTGCTTATTGAAGTTTTGACAAACTTAGTTGAACGGCATCGTCAAGCTCGAGCTGCTGTAACAGATGAGGTGGTAGATGTATTTATGACTCCAAGGCCTCTTCCTGATATGTTTGGTTAA___GGATGTTTCTCTTTCGACCATTTTGTGAGAGAATACAGAGTTTCACTTGGCGTATCTAAGTTCCAATTTTTTTCCCTGTTGTCTCTCAATTTCATGCTATTAGATTTAAAATTGTTAGAACATAGTTAAAGGGATTGAGTTAAATTTTCCATTGTAAAACTATCACTTTGATCAAAAGGTGATTTGCTGATTTCTGTAATAAGACTGCACTTTGAACTGGTGAGAGATCAATTCAACCAGTCAAAATTGTACATTATTCCTGATGCCATACTGAGATGGATGTGAGAATCCCAATAGATAAGCTTTTGCACGTTTTTTATTTTGCTGTAAAAAGTTTGACTCGAGCGCAGTCAGTTTGCAAATCAGAAGGTTTTGTAGCTATTTATGCAGTGGACAAAGATATAAGATTATATCAATTTGCTCAAGAGAGTCCATCCTTCGCATGCAAAAATATATGACGCTACACACCTAATTTTCGTTTCTTTGATATTTAAACCAAGAGATTGTAACGTTTTATTTGCTAACCCTTCCTTAATATATACCGTTCTAATATTTGAG

Fln Alignment:

sp_v1.1_unigene22442___VEGSHQSQNENAEDESQIVTPWEVAAKEGGRIDYDKLIVQFGCQKLDQSIVERVEKLTDKPAHVFLRRGVFFAHREFDKILDAFEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLTIEESQRLARENAKDIIACGFDISRTFIFSDFDYVGGAFYKNMVRIAKCVTLNQVKGIFGFTGEDHIGKVSFPPVQAAPSFPSSFPHLFGDKNDLRCLIPCAIDQDPYFRMTRDVAPRIGCHKPSLIESLFFPALQGETGKMSASDSTTAIYVTDSAKDIKNKVNKYAFSGGGDTIENHRKFGANLEVDISVKYLGFFLEDDAELENIKQEYGAGRMLTGEVKKLLIEVLTNLVERHRQARAAVTDEVVDVFMTPRPLPDMFG
B8LLD4_______________MEGSH----ENAEDENQIVTPWEVAAKEGGRIDYDKLIVKFGCQKLDQSIVQRVEKLTGKPAHVFLRRGVFFAHREFDKILDAFEKGENFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLTIEESQRLARENAKDIIACGFDISRTFIFSDFDYVGGAFYKNMVRIAKCVTLNQVRAIFGFTGEDHIGKVSFPPVQAAPSFPSSFPHLFGDKNNLRCLIPCAIDQDPYFRMTRDVAPRIGCQKPSLIESLFFPALQGETGKMSASDSTTAIYVTDSAKDIKNKVNKYAFSGGGDTIENHRKFGANLEVDISVKYLSFFLEDDAELENIKQEYGAGRMLTGEVKKLLIEVLTNMVERHRKARAAVTDEMVDVFMSARPLPDMFG

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
213	87			12	0.992554
214	85		14		0.993533
215	85		14		0.993533
216		14	85		0.993533
217	83			16	0.994512
219			83	16	0.994512
220		16	83		0.994512
222		16	83		0.994512
223			83	16	0.994512
224		16	83		0.994512
225	16	83			0.994512
310	75		25		0.996473
792	77		22		0.999999
795			25	75	1.0
797			25	75	1.0
798	25			75	1.0
803		75		12	0.975346
804			12	87	0.992554
805			25	75	1.0
806		87	12		0.992554
807	75	12		12	0.975346
808			14	85	0.993533
809			14	85	0.993533
811	28	71			1.0
1109	90	10			0.90298
1110	90		10		0.90298
1113			10	90	0.90298
1117		10	90		0.90298
1118		10	90		0.90298
1122	80	20			0.999996
1124	88		11		0.923564
1322	88			11	0.999952
1328		86	9		0.999642
1329			9	90	0.999842
1330		9	4	86	0.999642
1331	9	86	4		0.999642
1332		90	9		0.999842
1334		9	90		0.999842
1336		13		81	1.0
1337	90	9			0.999842
1340			9	90	0.999842
1341		9		90	0.999842
1346		8		91	0.999807
1348	91	8			0.999807
1349			91	8	0.999807
1350		8	91		0.999807
1658	11			33	1.0
1751	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain